View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_low_1 (Length: 757)
Name: NF6392_low_1
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 285 - 598
Target Start/End: Complemental strand, 494721 - 494422
Alignment:
| Q |
285 |
agtgatggaatgtaaaaa-tacatgtgaaatttcagtctccgctaggcctctactacatccactatatttctaatagtacattcttccataagaaatgaa |
383 |
Q |
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| T |
494721 |
agtgatggaatttaaaaaatacatgtgaaatttcagtctccgctaggcctctacta-----------tgtttaata---cattcttccataagaaatgaa |
494636 |
T |
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| Q |
384 |
gcatggattatgatatgtaatactaatattttttcagtccacttgtttttgatgatatggtatcatgaacagctgagttggataaaaataaatttgtcat |
483 |
Q |
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| T |
494635 |
gcatggattatgatatgtaattctaatattttttcagtccacttgtttttgatgatatggtatcatgaacagctgagttggataaaaacaaatttgtcat |
494536 |
T |
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| Q |
484 |
taatcaatacctatgttattatttttgcttttctagtcaccatgttacccatgactcaatatttattattagaagtcaatgctcgagttatgcatgtatg |
583 |
Q |
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| T |
494535 |
taatcaata-ctatgttattatttttgcttttctagtcctcatgttactcatgactcgatgtttattattagaagtcaatgctcgatttatgcatgtatg |
494437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 495177 - 495035
Alignment:
| Q |
1 |
aatcaatctctttaatctaggccttttgacaggcagactacaccgaaaacacaatattttctctgttcaagggggaaattatatttttaaagcattgata |
100 |
Q |
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| T |
495177 |
aatcaatctctttaatctaggccttttgacaggcagactacactgattacacattattttctctgttctagggggaaattatatttttaaagcattgata |
495078 |
T |
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| Q |
101 |
taatagt-aattactaataactaatatatcatagtgcatcaaa |
142 |
Q |
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| T |
495077 |
caatagtaaattactaataactaatttatcatagtgcatcaaa |
495035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 678 - 742
Target Start/End: Complemental strand, 494364 - 494300
Alignment:
| Q |
678 |
actttagaatattattttcttgaagcaatacatggaccacaatattacattcgttttataaatag |
742 |
Q |
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| T |
494364 |
actttagaatactattttctttaagcaagacatggacaacaatattacattcgttttataaatag |
494300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 167 - 273
Target Start/End: Complemental strand, 10979640 - 10979533
Alignment:
| Q |
167 |
tagtttggtttctt-aggaatttattgtccacttcctgataagattcatcggctatctttgcttgaagttttggatttgagctcaaatttcttatttgat |
265 |
Q |
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| T |
10979640 |
tagtttggtttctttaggaatatggggtccactttctgataaaattcataggctatctttgcttgaagttttggatttgagttcaaatttcttatttggt |
10979541 |
T |
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| Q |
266 |
tctattcc |
273 |
Q |
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|||||||| |
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| T |
10979540 |
tctattcc |
10979533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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