View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6392_low_10 (Length: 578)
Name: NF6392_low_10
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_10 |
 | |
|
| [»] scaffold0066 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 16 - 561
Target Start/End: Original strand, 7425576 - 7426121
Alignment:
| Q |
16 |
cacagattatttacgctgtgtctgaaatatccgaagtcgtggcagattgacaaattgttgattcatagtctgaggtgggggtctgtctgtggtgttttct |
115 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7425576 |
cacagattatttatgctgtgtctgaaatatccgaagtcgtggcagattgacaaattgttgattcatagtctgaggtgggggtctgtctgtggtgttttct |
7425675 |
T |
|
| Q |
116 |
tgttgttgctgactgtggtgtttctgtcggtctgctgaagaggggatgttctcttaatgtctcgagcttttgtttggaagcagagggagtcttgtggtgc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7425676 |
tgttgttgctgactgtggtgtttctgtcggtctgctgaagagggaatgttctcttaatgtctcgagcttttgtttggaagcagagggagtcttgtggtgc |
7425775 |
T |
|
| Q |
216 |
tgtgagtataggagctaaggtggttattattaaattacttcaatttggtagcaagaggatatggctttagcagggttgtaatttttggcatttgagagtg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7425776 |
tgtgagtataggagctaaggtggttattattaaattacttcaatttggtagcaagaggatatggctttagcagggttataatttttggcatttgagagtg |
7425875 |
T |
|
| Q |
316 |
ccttttctgtaacaggtgcaggagtctgttgtagtgcagcagggacatctcattttgaatgcagatatagcaaggcgctgacagcaatattggtggtatt |
415 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7425876 |
ccttttctgtaacaggtgcaggcgtctgttgtagtgcagcagggacatctcattttgaatgcagatatagcaaggcgctgacagcaatattggtggtatt |
7425975 |
T |
|
| Q |
416 |
gcaacagtataattcattaattgagaaaatattttttctttctcagggcatattaagatgttattctattctcttaaatggcagcagcatttgcaagttg |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7425976 |
gcaacagtataattcattaattgagaaaatattttttctttctcagggcatattaagatgttattctattctcttaaatggcagcagcatttgcaagttg |
7426075 |
T |
|
| Q |
516 |
ttttcaaaattatgcgttaaattttcaacaattgcaatcttggcaa |
561 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7426076 |
ttttcaaaattatgcgttaaatttttaacaattgcaatcttggcaa |
7426121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 32 - 555
Target Start/End: Complemental strand, 18139 - 17602
Alignment:
| Q |
32 |
tgtgtctgaaatatccgaagtcgtggcagattgacaaattgttgattcatagtctgaggtgggggtctgtctgtggtgttttcttgttgttgctgactgt |
131 |
Q |
| |
|
||||||||||||||||||||| | ||||| ||| || || |||||||||||||||||| |||||| ||||| ||||| ||||||| || ||||| |||| |
|
|
| T |
18139 |
tgtgtctgaaatatccgaagttgcggcagtttggcagttttttgattcatagtctgaggagggggtgtgtctatggtgctttcttgctgctgctggctgt |
18040 |
T |
|
| Q |
132 |
ggtgtttctgtcggtctgctgaagaggggatgttctcttaatgtctcgagcttttgtttggaagcagagggagtcttgtggtgctgtgagtat--aggag |
229 |
Q |
| |
|
|||||||| ||||| | ||| |||||||| ||||| || |||| | ||||||| |||||||||||||||||||| || |||||| || | || || |
|
|
| T |
18039 |
ggtgtttcggtcggccgtctgtagaggggacattctcatagggtctggtgcttttggttggaagcagagggagtcttatgatgctgtttgttttaagaag |
17940 |
T |
|
| Q |
230 |
ct-aaggtggttattattaaattacttcaatttggtagcaa------gaggatatggctttagcagggttgtaatttttggcatttgagagtgccttttc |
322 |
Q |
| |
|
|| || |||||||||||| ||| | ||||| ||| ||||| |||| | |||||||||||| | |||||||||||||||| | | ||||| |
|
|
| T |
17939 |
ctaaatgtggttattattcaatcagttcaagttgacagcaagaagaggaggctttggctttagcagttctaatatttttggcatttgagggcgttttttc |
17840 |
T |
|
| Q |
323 |
tgtaacaggtgcaggagtctgttgtagtgcagcaggga--------catctcattttgaatgcagatatagcaaggcgctgacagcaatattggtggtat |
414 |
Q |
| |
|
|||||||||| |||| | | | ||||||| || ||| ||||||| ||||| |||| ||||||||||| |||| |||||| ||||||||||| |
|
|
| T |
17839 |
tgtaacaggtacaggcatattatttagtgcaacatggattttctttcatctcagtttgattgcatatatagcaaggtgctggcagcaacattggtggtat |
17740 |
T |
|
| Q |
415 |
tgcaacagtataattcattaattgagaaaatattttttctttctcagggcatattaagatgttattctattctcttaaatggcagcagcatttgcaagtt |
514 |
Q |
| |
|
||||||| ||||| ||||||||||||| | ||||||| |||||||| || || |||| ||||||||||||||||||||||||| | | ||| |
|
|
| T |
17739 |
cctaacagtagaattccttaattgagaaaaga---tttctttgtcagggcaggttgagttgttcagctattctcttaaatggcagcagcatctttatgtt |
17643 |
T |
|
| Q |
515 |
gttttcaaaattatgcgttaaattttcaacaattgcaatct |
555 |
Q |
| |
|
||||||| |||||| ||||||||||| || |||||||||| |
|
|
| T |
17642 |
gttttcatcattatgtgttaaattttcgactattgcaatct |
17602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University