View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_low_100 (Length: 232)
Name: NF6392_low_100
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_100 |
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Alignment Details
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 215
Target Start/End: Original strand, 37321286 - 37321394
Alignment:
| Q |
109 |
attaaacaagaactgtcatcaaagaatgatgatgatgat---atatcaatagaaattaannnnnnncccccagggagattaggctcaaacacaagacaaa |
205 |
Q |
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| T |
37321286 |
attaaacaagaactgtcatcaaagaatgatgatgatgatgatatatcaatacaaattaatttttttcccc-agggagattaggctcaaacacaagacaaa |
37321384 |
T |
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| Q |
206 |
caggggaaat |
215 |
Q |
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| T |
37321385 |
caggggaaat |
37321394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 37321213 - 37321270
Alignment:
| Q |
1 |
aaccatctattttgaagaaaaaatgtaacaannnnnnnnattgattctaccatctatt |
58 |
Q |
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| T |
37321213 |
aaccatctattttgaagaaaaaatgtaacaattttttctattgattctaccatctatt |
37321270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 37330276 - 37330315
Alignment:
| Q |
176 |
cagggagattaggctcaaacacaagacaaacaggggaaat |
215 |
Q |
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| T |
37330276 |
cagggagattaagctcaaacacaagacaaataggggaaat |
37330315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 37347482 - 37347446
Alignment:
| Q |
176 |
cagggagattaggctcaaacacaagacaaacagggga |
212 |
Q |
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| T |
37347482 |
cagggagattaggttcaaacacaagacaatcagggga |
37347446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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