View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_low_102 (Length: 228)
Name: NF6392_low_102
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_102 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 37 - 222
Target Start/End: Original strand, 33041900 - 33042086
Alignment:
| Q |
37 |
gaaagaagttaattgagaatgaaaactataatttattcagagtaattttcaatactgtatataa-tcataaaatcactaagcatatttgtttttctttcc |
135 |
Q |
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| T |
33041900 |
gaaagaagttaattgagaaggaaaactataatttattcagagtaattttcaatactgtatataaatcataacatcactaagcatatttgtttttctttcc |
33041999 |
T |
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| Q |
136 |
accgtcagctcatactatctttttactctcaaatatgaacaataaatatagtaattaaaacaatattaacctagaatagataacatg |
222 |
Q |
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| T |
33042000 |
accgtcagctcatactatctttttactctcaaatatgaacaataaatatagtaattaaaacaatattaacctagaatagataacatg |
33042086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 33041831 - 33041874
Alignment:
| Q |
7 |
tttctgattttctatcaagcatggaataacgaaagaagttaatt |
50 |
Q |
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| T |
33041831 |
tttctgattttctatcaagcatggaataatgaaagaagttaatt |
33041874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 176
Target Start/End: Complemental strand, 4796285 - 4796195
Alignment:
| Q |
84 |
ttcaatactgtatataatcataaaatcactaagcatatttgtttttctttccaccgtcagctcatactatctttttactctcaaatatgaaca |
176 |
Q |
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| T |
4796285 |
ttcaatattgtatataatcataaaaaccttaagcttgttggattttctttccaccggccgttcagactatcttttaa--ctcaaatatgaaca |
4796195 |
T |
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