View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_low_104 (Length: 213)
Name: NF6392_low_104
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_104 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 34706066 - 34706247
Alignment:
| Q |
12 |
agaatcaaaggtcctatttataattgctatagatttaaggaaaactatgcaggtaggtgcaagttgactgctacctgcaaattctac-nnnnnnngtagc |
110 |
Q |
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| T |
34706066 |
agaatcaaaggtcctatttataattgctatagatttaaggaaaactatgcaggtaggtgcaagttgactgctacctgcaaattctacaaaaaaaagtagc |
34706165 |
T |
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| Q |
111 |
aaattttcatctttgaattcatattctcttttttctctaagttagtcccttacttaatgttgttggcgtccactgtcaacta |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34706166 |
aaattttcatctttgaattcatattctcttttttctctaagttagtcccttacttaatgttgttggcgtccactgtcaacta |
34706247 |
T |
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Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 4358194 - 4358372
Alignment:
| Q |
14 |
aatcaaaggtcctatttataattgctatagatttaaggaaaactatgcaggtaggtgcaagttgactgctacctgcaaattct----acnnnnnnngtag |
109 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| || | || |
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| T |
4358194 |
aatcaaaggtcctatatataattgctatagatttaaggaaaactatgcaggtaggtgcaagtttactgccatctgcaaattctacacacaaaaaaagaag |
4358293 |
T |
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| Q |
110 |
caaattttcatctttgaattcatattctcttttttctctaagttagtcccttacttaatgttgttggcgtccactgtca |
188 |
Q |
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||| |||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4358294 |
caatttttcatctttgaagtcatattttctcttttctctaagttagtcccttacttaatgttgttggcgtcccctgtca |
4358372 |
T |
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