View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6392_low_11 (Length: 564)

Name: NF6392_low_11
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6392_low_11
NF6392_low_11
[»] chr4 (10 HSPs)
chr4 (383-552)||(24056783-24056952)
chr4 (59-125)||(21867441-21867507)
chr4 (59-125)||(21923302-21923368)
chr4 (373-417)||(22905032-22905076)
chr4 (373-417)||(22956700-22956744)
chr4 (373-417)||(43441788-43441832)
chr4 (374-417)||(44645346-44645389)
chr4 (475-535)||(26728379-26728439)
chr4 (345-421)||(26728493-26728569)
chr4 (359-431)||(34821674-34821746)
[»] chr1 (1 HSPs)
chr1 (75-127)||(3213944-3213996)
[»] chr8 (2 HSPs)
chr8 (365-423)||(4903479-4903537)
chr8 (366-419)||(3961182-3961235)
[»] scaffold0272 (1 HSPs)
scaffold0272 (60-125)||(2472-2537)
[»] chr7 (1 HSPs)
chr7 (365-405)||(32016682-32016722)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 8e-84; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 383 - 552
Target Start/End: Original strand, 24056783 - 24056952
Alignment:
Q  383 agccaccactttggacggagctgaactcttccaaatatgcgtaaacaccttgacttgcatctccgttagcgatccctcctcaaaccgcatcccctccaac 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  24056783 agccaccactttggacggagctgaactcttccaaatatgcgtaaacaccttgactcgcatctctgttagcgatccctcctcaaaccgcatcccctccaac 24056882  T
Q  483 ttcttgtacatagagttcaccgagaaacaaccgttctcttccaatccccaccaccatacatcctcacctt 552  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24056883 ttcttgtacatagagttcaccgagaaccaaccgttctcttccaatccccaccaccatacatcctcacctt 24056952  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 21867441 - 21867507
Alignment:
Q  59 gtcatttctcaccctccaaattgtccaaatcgccgcatgccaaataagccggtaccctttacgaatc 125  Q
    ||||||||| || | ||||||||||||||| ||||||||||| |||| || |||||| |||||||||    
T  21867441 gtcatttctaactcgccaaattgtccaaatagccgcatgccagataatccagtaccccttacgaatc 21867507  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 21923302 - 21923368
Alignment:
Q  59 gtcatttctcaccctccaaattgtccaaatcgccgcatgccaaataagccggtaccctttacgaatc 125  Q
    ||||||||| || | ||||||||||||||| ||||||||||| |||| || |||||| |||||||||    
T  21923302 gtcatttctaactcgccaaattgtccaaatagccgcatgccagataatccagtaccccttacgaatc 21923368  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 417
Target Start/End: Original strand, 22905032 - 22905076
Alignment:
Q  373 tccaagaaaaagccaccactttggacggagctgaactcttccaaa 417  Q
    |||||||||||||||| |||||||||||||| | |||||||||||    
T  22905032 tccaagaaaaagccacgactttggacggagccggactcttccaaa 22905076  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 417
Target Start/End: Original strand, 22956700 - 22956744
Alignment:
Q  373 tccaagaaaaagccaccactttggacggagctgaactcttccaaa 417  Q
    |||||||||||||||| |||||||||||||| | |||||||||||    
T  22956700 tccaagaaaaagccacgactttggacggagccggactcttccaaa 22956744  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 417
Target Start/End: Original strand, 43441788 - 43441832
Alignment:
Q  373 tccaagaaaaagccaccactttggacggagctgaactcttccaaa 417  Q
    |||||||||||||||| |||||||||||||| | |||||||||||    
T  43441788 tccaagaaaaagccacgactttggacggagccggactcttccaaa 43441832  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 417
Target Start/End: Complemental strand, 44645389 - 44645346
Alignment:
Q  374 ccaagaaaaagccaccactttggacggagctgaactcttccaaa 417  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||    
T  44645389 ccaagaaaaagccaccaccttggatggagccgaactcttccaaa 44645346  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 535
Target Start/End: Complemental strand, 26728439 - 26728379
Alignment:
Q  475 cctccaacttcttgtacatagagttcaccgagaaacaaccgttctcttccaatccccacca 535  Q
    |||||||||||||||||||||| |||||||  || | ||| ||| ||||||||| ||||||    
T  26728439 cctccaacttcttgtacatagatttcaccgtaaatccaccattcccttccaatctccacca 26728379  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 26728569 - 26728493
Alignment:
Q  345 ttcgtcgggatccaatcataaagaagtttccaagaaaaagccaccactttggacggagctgaactcttccaaatatg 421  Q
    |||||||| |||||||||| ||| | ||||||||| ||  | |||||||| |||||||| | ||| |||||||||||    
T  26728569 ttcgtcggtatccaatcatgaagcaatttccaagagaattctaccactttagacggagccggacttttccaaatatg 26728493  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 431
Target Start/End: Original strand, 34821674 - 34821746
Alignment:
Q  359 atcataaagaagtttccaagaaaaagccaccactttggacggagctgaactcttccaaatatgcgtaaacacc 431  Q
    ||||| |||||||||||||| |||  | |||||||| || ||||| |||||||||| ||| |||| |||||||    
T  34821674 atcatgaagaagtttccaagcaaagacgaccactttagatggagccgaactcttccgaatttgcgcaaacacc 34821746  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 3213996 - 3213944
Alignment:
Q  75 caaattgtccaaatcgccgcatgccaaataagccggtaccctttacgaatcct 127  Q
    |||||||||||||||| |||||| |||||||||||||| |||||  |||||||    
T  3213996 caaattgtccaaatcgacgcatgtcaaataagccggtaacctttttgaatcct 3213944  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 423
Target Start/End: Complemental strand, 4903537 - 4903479
Alignment:
Q  365 aagaagtttccaagaaaaagccaccactttggacggagctgaactcttccaaatatgcg 423  Q
    |||||||||||||| |||| |||||||||| ||||| || |  ||||||||||||||||    
T  4903537 aagaagtttccaagtaaaaaccaccactttcgacggtgccgggctcttccaaatatgcg 4903479  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Original strand, 3961182 - 3961235
Alignment:
Q  366 agaagtttccaagaaaaagccaccactttggacggagctgaactcttccaaata 419  Q
    ||||||||||||||||||||||| || || || |||||||| || |||||||||    
T  3961182 agaagtttccaagaaaaagccacgacctttgagggagctgagcttttccaaata 3961235  T

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Target: scaffold0272 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 2537 - 2472
Alignment:
Q  60 tcatttctcaccctccaaattgtccaaatcgccgcatgccaaataagccggtaccctttacgaatc 125  Q
    ||||||||||||||||||||  |||||| ||| || |||||||| | || ||| ||||||||||||    
T  2537 tcatttctcaccctccaaatactccaaaccgcggcgtgccaaatcaaccagtaacctttacgaatc 2472  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 405
Target Start/End: Complemental strand, 32016722 - 32016682
Alignment:
Q  365 aagaagtttccaagaaaaagccaccactttggacggagctg 405  Q
    |||||||||||||||||||||||| ||||| ||||| ||||    
T  32016722 aagaagtttccaagaaaaagccacaacttttgacggggctg 32016682  T

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