View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6392_low_15 (Length: 477)

Name: NF6392_low_15
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6392_low_15
NF6392_low_15
[»] chr1 (3 HSPs)
chr1 (20-464)||(18344784-18345228)
chr1 (51-464)||(18339626-18340039)
chr1 (51-464)||(18303657-18304070)


Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 20 - 464
Target Start/End: Complemental strand, 18345228 - 18344784
Alignment:
Q  20 tctctcagaggcagaaaatctcaatatacgatataatgctcgtggagagaatgtaatgatgccggaggttccatttgaggattttcgggttggttcacaa 119  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18345228 tctctcagaggcagaaaatctcaatatacggtataatgctcgtggagagaatgtaatgatgccggaggttccatttgaggattttcgggttggttcacaa 18345129  T
Q  120 ttttttatcttgaaccggaaacatacaaatgttgtgttgagagatcaaaagctatggaacaagtttcagattccatgtacaaataagtattattgttacc 219  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  18345128 ttttttatcttgaaccggaaacatacaaaggttgtgttgagagatcaaaagctatggaacaagtttcagattccatgtacaaataagtattattgttatc 18345029  T
Q  220 cagaggagcattatttttcgactcttctatcaatggaggatttgaaggggtatactggttttacactgactagagttaattggaccggtgctgtctatgg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18345028 cagaggagcattatttttcgactcttctatcaatggaggatttgaaggggtgtactggttttacactgactagagttaattggaccggtgctgtctatgg 18344929  T
Q  320 tcatccacatctttatactccagcagaggtgtcgccggagctttttcgtcagctgagggtctccaattggagttattcatatctattcgctaggaaattc 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18344928 tcatccacatctttatactccagcagaggtgtcgccggagctttttcgtcagctgagggtctccaattggagttattcatatctattcgctaggaaattc 18344829  T
Q  420 tcgccggaatgtcttgctccgttgatgaatattgctgatgatgtc 464  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  18344828 tcgccggaatgtcttgctccgttgatgaatattgccgatgatgtc 18344784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 51 - 464
Target Start/End: Complemental strand, 18340039 - 18339626
Alignment:
Q  51 tataatgctcgtggagagaatgtaatgatgccggaggttccatttgaggattttcgggttggttcacaattttttatcttgaaccggaaacatacaaatg 150  Q
    ||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||  |||| ||| |||| |    
T  18340039 tataacgctcgtggagagaatgttatgttgccggaggttccatttgaggattttcgggttggttcgcagttttttatcttgaataggaagcatgcaaagg 18339940  T
Q  151 ttgtgttgagagatcaaaagctatggaacaagtttcagattccatgtacaaataagtattattgttacccagaggagcattatttttcgactcttctatc 250  Q
    ||||| |||||||| | ||||||||||| ||||||| |||||| |||  ||||  | ||| |||||| ||||| |||||||||||| | |||||| | ||    
T  18339939 ttgtggtgagagattataagctatggaagaagtttcggattccttgtgtaaatttggattcttgttatccagaagagcattattttcccactcttttgtc 18339840  T
Q  251 aatggaggatttgaaggggtatactggttttacactgactagagttaattggaccggtgctgtctatggtcatccacatctttatactccagcagaggtg 350  Q
     ||||||||| |||| |||| |||||||||||||||||| |||||||||||||| |||  |    |||| ||||| |||||||||||||| |  |||||     
T  18339839 tatggaggatctgaatgggtgtactggttttacactgacgagagttaattggactggttgttgggatggacatcctcatctttatactccggaggaggtt 18339740  T
Q  351 tcgccggagctttttcgtcagctgagggtctccaattggagttattcatatctattcgctaggaaattctcgccggaatgtcttgctccgttgatgaata 450  Q
    || ||||||||  |||| ||||||||||| || |||| |||||||||||||||||| || ||||||||||||||||| |||||||||||| ||||| |||    
T  18339739 tccccggagctaattcgacagctgagggtgtcgaattcgagttattcatatctatttgcgaggaaattctcgccggagtgtcttgctccgctgatggata 18339640  T
Q  451 ttgctgatgatgtc 464  Q
    | || |||||||||    
T  18339639 tagccgatgatgtc 18339626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 51 - 464
Target Start/End: Original strand, 18303657 - 18304070
Alignment:
Q  51 tataatgctcgtggagagaatgtaatgatgccggaggttccatttgaggattttcgggttggttcacaattttttatcttgaaccggaaacatacaaatg 150  Q
    ||||||||||||||| || |||||||||||||||||||| ||||  ||||||||||    || || ||||| |||||| |||||||||||||| |||| |    
T  18303657 tataatgctcgtggaaaggatgtaatgatgccggaggtttcattcaaggattttcgcaaaggctcgcaattctttatcctgaaccggaaacatgcaaagg 18303756  T
Q  151 ttgtgttgagagatcaaaagctatggaacaagtttcagattccatgtacaaataagtattattgttacccagaggagcattatttttcgactcttctatc 250  Q
    ||||  || ||||||||||| | ||||| ||||||| ||||||||||| | ||| |||||  |||||||| || |||||||| ||| |||||||||||||    
T  18303757 ttgttctgcgagatcaaaagttgtggaagaagtttcggattccatgtatagatacgtattcctgttacccggaagagcattactttccgactcttctatc 18303856  T
Q  251 aatggaggatttgaaggggtatactggttttacactgactagagttaattggaccggtgctgtctatggtcatccacatctttatactccagcagaggtg 350  Q
     ||||||||     | || |  || |||||||| || || |||||||| ||||| |||  |    | || ||||| ||||||||||||| ||  ||||||    
T  18303857 gatggaggagcgcgatggctgcacgggttttactcttacgagagttaactggactggttgtactgacggacatccgcatctttatactcgagaggaggtg 18303956  T
Q  351 tcgccggagctttttcgtcagctgagggtctccaattggagttattcatatctattcgctaggaaattctcgccggaatgtcttgctccgttgatgaata 450  Q
    |||||||||||| | || ||||| |||   || ||||  |||||  | ||||| || || ||||||||||| ||||||  ||| || ||||||||| |||    
T  18303957 tcgccggagcttgtacgccagcttaggaaatcgaattccagttacccctatctgtttgcaaggaaattctcaccggaaactctagcaccgttgatggata 18304056  T
Q  451 ttgctgatgatgtc 464  Q
    | ||| ||||||||    
T  18304057 tagcttatgatgtc 18304070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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