View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6392_low_18 (Length: 456)

Name: NF6392_low_18
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6392_low_18
NF6392_low_18
[»] chr7 (13 HSPs)
chr7 (314-445)||(13774735-13774866)
chr7 (349-445)||(13775130-13775226)
chr7 (349-442)||(13774950-13775043)
chr7 (349-441)||(13775250-13775342)
chr7 (20-127)||(13774368-13774475)
chr7 (349-444)||(13774890-13774985)
chr7 (349-441)||(13774830-13774922)
chr7 (349-444)||(13775310-13775405)
chr7 (190-251)||(13774611-13774672)
chr7 (349-441)||(13775010-13775102)
chr7 (349-441)||(13775190-13775282)
chr7 (349-444)||(13775070-13775165)
chr7 (128-195)||(13774504-13774571)


Alignment Details
Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 314 - 445
Target Start/End: Original strand, 13774735 - 13774866
Alignment:
Q  314 gacacgagactttgttaaccacatcaacataatcttctttttgatcgacgttcttcacagtttcctcttcagatatctcagctacgatcacaacatcttt 413  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13774735 gacacgagactttcttaaccacatcagcataatcttctttttgatcgacgttcttcacagtttcctcttcagatatctcagctacgatcacaacatcttt 13774834  T
Q  414 ttgatcggcattcttcacaatttcctcttcat 445  Q
    |||||||| |||||||||||||||||||||||    
T  13774835 ttgatcggtattcttcacaatttcctcttcat 13774866  T

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Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 349 - 445
Target Start/End: Original strand, 13775130 - 13775226
Alignment:
Q  349 tctttttgatcgacgttcttcacagtttcctcttcagatatctcagctacgatcacaacatctttttgatcggcattcttcacaatttcctcttcat 445  Q
    ||||||| |||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  13775130 tcttttttatcgacgttcttcacaatttcctcttcagatatcccagctacgatcgcaacatctttttgattggcattcttcacaatttcctcttcat 13775226  T

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Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 349 - 442
Target Start/End: Original strand, 13774950 - 13775043
Alignment:
Q  349 tctttttgatcgacgttcttcacagtttcctcttcagatatctcagctacgatcacaacatctttttgatcggcattcttcacaatttcctctt 442  Q
    ||||||| |||| ||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13774950 tcttttttatcggcgttcttcacaatttcctcttcagatgtcccagctacgatcacagcatctttttgatcggcattcttcacaatttcctctt 13775043  T

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Target: chr7; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 349 - 441
Target Start/End: Original strand, 13775250 - 13775342
Alignment:
Q  349 tctttttgatcgacgttcttcacagtttcctcttcagatatctcagctacgatcacaacatctttttgatcggcattcttcacaatttcctct 441  Q
    |||||||||||| ||||||||||| |||||||| || ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  13775250 tctttttgatcggcgttcttcacaatttcctctccatatatctcagctaccatcacaacatctttttgatcggcgttcttcacaatttcctct 13775342  T

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Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 13774368 - 13774475
Alignment:
Q  20 gatagaaaggagggtaaggaaacaatttacctcaagtaattaatgaacttcatcaaaggtaaattgtttaggatagtcgaatttgatttttgaatggaaa 119  Q
    |||||||| ||||| || ||||||||||| | ||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||    
T  13774368 gatagaaatgagggcaacgaaacaatttagcacaaataattaatgaacttcaccaaaggtaaattgtttaggatagtcgaattcgatttttgaatagaaa 13774467  T
Q  120 atatattt 127  Q
    ||| ||||    
T  13774468 ataaattt 13774475  T

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Target: chr7; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 349 - 444
Target Start/End: Original strand, 13774890 - 13774985
Alignment:
Q  349 tctttttgatcgacgttcttcacagtttcctcttcagatatctcagctacgatcacaacatctttttgatcggcattcttcacaatttcctcttca 444  Q
    |||||||||||| ||||||||||| |||||||| ||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||    
T  13774890 tctttttgatcggcgttcttcacaatttcctctccagatatctcatctaccatcacaacatcttttttatcggcgttcttcacaatttcctcttca 13774985  T

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Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 349 - 441
Target Start/End: Original strand, 13774830 - 13774922
Alignment:
Q  349 tctttttgatcgacgttcttcacagtttcctcttcagatatctcagctacgatcacaacatctttttgatcggcattcttcacaatttcctct 441  Q
    ||||||||||||   ||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13774830 tctttttgatcggtattcttcacaatttcctcttcatatctctcagctacgatcacaacatctttttgatcggcgttcttcacaatttcctct 13774922  T

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Target: chr7; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 349 - 444
Target Start/End: Original strand, 13775310 - 13775405
Alignment:
Q  349 tctttttgatcgacgttcttcacagtttcctcttcagatatctcagctacgatcacaacatctttttgatcggcattcttcacaatttcctcttca 444  Q
    |||||||||||| ||||||||||| |||||||| |||||||||||||||| |||||||||||||||||| |||  | |||||||||||||||||||    
T  13775310 tctttttgatcggcgttcttcacaatttcctctccagatatctcagctaccatcacaacatctttttgagcggtgtccttcacaatttcctcttca 13775405  T

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Target: chr7; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 13774611 - 13774672
Alignment:
Q  190 aaataataatgtttttgagagaagtatttgtgactgataaacacaataaaaaaccacatgac 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13774611 aaataataatgtttttgagagaagtatttgtgactgataaacacaataaaaaaccacatgac 13774672  T

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Target: chr7; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 349 - 441
Target Start/End: Original strand, 13775010 - 13775102
Alignment:
Q  349 tctttttgatcgacgttcttcacagtttcctcttcagatatctcagctacgatcacaacatctttttgatcggcattcttcacaatttcctct 441  Q
    |||||||||||| | ||||||||| ||||||||| | || |||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  13775010 tctttttgatcggcattcttcacaatttcctctttatatctctcagcttcgatcacaacatctttttgatcggcgttcttcacaatttcctct 13775102  T

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Target: chr7; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 349 - 441
Target Start/End: Original strand, 13775190 - 13775282
Alignment:
Q  349 tctttttgatcgacgttcttcacagtttcctcttcagatatctcagctacgatcacaacatctttttgatcggcattcttcacaatttcctct 441  Q
    |||||||||| | | ||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  13775190 tctttttgattggcattcttcacaatttcctcttcatatctctcagcttcgatcacaacatctttttgatcggcgttcttcacaatttcctct 13775282  T

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Target: chr7; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 349 - 444
Target Start/End: Original strand, 13775070 - 13775165
Alignment:
Q  349 tctttttgatcgacgttcttcacagtttcctcttcagatatctcagctacgatcacaacatctttttgatcggcattcttcacaatttcctcttca 444  Q
    |||||||||||| ||||||||||| |||||||| ||||||||||| |||| || ||||||||||||| |||| | |||||||||||||||||||||    
T  13775070 tctttttgatcggcgttcttcacaatttcctctccagatatctcatctaccattacaacatcttttttatcgacgttcttcacaatttcctcttca 13775165  T

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Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 13774504 - 13774571
Alignment:
Q  128 aaaactacgtaagtatatgtcattgaaaagtataaaaagaacacgggccatacttttatcgcaaataa 195  Q
    |||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  13774504 aaaactacataaatatatgtcgttgaaaagtataaaaagaacacgggccatacttttatcacaaataa 13774571  T

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