View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_low_20 (Length: 454)
Name: NF6392_low_20
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 77 - 442
Target Start/End: Complemental strand, 3948416 - 3948041
Alignment:
| Q |
77 |
atcaaacacattgttcagttcaaaaagcatctcattttaagagtacaagcaaacaaccaagcatttgaggaagaatcagcaaaagaaaaggggatgaaag |
176 |
Q |
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| T |
3948416 |
atcaaacacattgtgcatttcaaaaagcatctcattttaagagtacaagcaaacaaccaaacatttaaggaaaaatcagcaaaataataggggatgaaag |
3948317 |
T |
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| Q |
177 |
taaagcaaccaggttcctcatgtaacgtaacttatggccttatgagggttagatgtaa--------cagagtactgatgctatatatgttatatcaataa |
268 |
Q |
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| T |
3948316 |
taaagcaaccaggttcctcaagtaacgtaacttattgccttatgagggtgagatgtaaatatataacagagtactgatgctatatatgttatatcaataa |
3948217 |
T |
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| Q |
269 |
aagtagaaaaagaaaacaagagatgcatgacataactgtgccttactatgaaagtgagagaaagtaacaaaagaatgtgggagcaataacaaaattgtac |
368 |
Q |
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| T |
3948216 |
aagtagaaaaagaaaacaagagatgcatgacataactgtgccttcctatgaaagtgagcaaaagtaacaaaagaatgtgggagcaataacaaaattgtac |
3948117 |
T |
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| Q |
369 |
aactactacgtagatagagtgtgaaagagaaataagaaaagtgtgatcattattg--agaggtaaaatcacaggtt |
442 |
Q |
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| T |
3948116 |
aactactacgtagatagagtgtgaaagagaaataagaaaagtgtgatcattattgagagaggtaaaatcacaggtt |
3948041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 3948762 - 3948690
Alignment:
| Q |
1 |
ttttctttttgttttcatctctcacaaaaaattagaagttagaaaaattatccaatcaaggaaaattgtagct |
73 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
3948762 |
ttttctttttgttttcatctctcacaaaaaattagaagttagaaaaattctccaatcaaagaaaattgtagct |
3948690 |
T |
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