View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6392_low_21 (Length: 451)
Name: NF6392_low_21
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 20 - 444
Target Start/End: Original strand, 50398910 - 50399334
Alignment:
| Q |
20 |
caatactcatagctatcttaggtctggttttgtttgctcacttaatcggcaacatgcaggtaatttgaattttcaaatcttcaaaatgtgcattgtttct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50398910 |
caatactcatagctatcttaggtctggttttgtttgctcacttaatcggcaacatgcaggtaatttgaattttcaaatcttcaaaatgtgcattgtttct |
50399009 |
T |
|
| Q |
120 |
caattgtcttgtcaagaacaggtttccatgtaggctatagacattgagacatttcaatctttttgaaatgttatgtgtcttatatcatgctcaactcaac |
219 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| |
|
|
| T |
50399010 |
caattgtcttgtcaagaacaggcttccatgtaggctatagacattgagacatttcaatctttttgaaatgttatgtgtatataagcatgctcaactcaac |
50399109 |
T |
|
| Q |
220 |
gcagacctatttgcaatctattactgtgaggcttgaagagtggaggctcaagcgacgtgacacagaagaatggatgaaacaccggcaactcccacaattt |
319 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50399110 |
gcagacctatttggaatctattactgtgaggcttgaagagtggaggctcaagcgacgtgacacagaagaatggatgaaacaccggcaactcccacaattt |
50399209 |
T |
|
| Q |
320 |
ctcagagagcgcgtccgaagatttgttcagtacaagtggcttgcaactcgaggtgttgatgaagaaacaatcctgagaggcctccctacagaccttcgta |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50399210 |
ctcagagagcgcgtccgaagatttgttcagtacaagtggcttgcaactcgaggtgttgacgaagaaacaatcctgagaggcctccctacagaccttcgta |
50399309 |
T |
|
| Q |
420 |
gagatatccaacgccacctttgctt |
444 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
50399310 |
gagatatccaacgccacctttgctt |
50399334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 385
Target Start/End: Original strand, 40677766 - 40677810
Alignment:
| Q |
341 |
tttgttcagtacaagtggcttgcaactcgaggtgttgatgaagaa |
385 |
Q |
| |
|
|||||||||||||| |||||||| ||| |||||||||| |||||| |
|
|
| T |
40677766 |
tttgttcagtacaaatggcttgctactagaggtgttgacgaagaa |
40677810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 387
Target Start/End: Original strand, 24978609 - 24978774
Alignment:
| Q |
222 |
agacctatttgcaatctattactgtgaggcttgaagagtggaggctcaagcgacgtgacacagaagaatggatgaaacaccggcaactcccacaatttct |
321 |
Q |
| |
|
|||| ||||| ||||| |||||| | |||||||||||||||||||| |||||| | |||||||| || |||||| ||| || |||||||| || | | |
|
|
| T |
24978609 |
agacatatttacaatcaattactataaggcttgaagagtggaggctaaagcgaagagacacagaggagtggatgggacatcgccaactccctgaagattt |
24978708 |
T |
|
| Q |
322 |
cagagagcgcgtccgaagatttgttcagtacaagtggcttgcaactcgaggtgttgatgaagaaac |
387 |
Q |
| |
|
||| || || || ||||||| || || || |||||||||||||| ||||||||||||||||| |
|
|
| T |
24978709 |
gagatttcgtgttagacgatttgtacaatataaatggcttgcaactcgtggtgttgatgaagaaac |
24978774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University