View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6392_low_24 (Length: 445)

Name: NF6392_low_24
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6392_low_24
NF6392_low_24
[»] chr3 (4 HSPs)
chr3 (1-245)||(11427136-11427380)
chr3 (287-430)||(11427422-11427573)
chr3 (112-238)||(11430984-11431110)
chr3 (287-344)||(11431159-11431216)
[»] chr1 (2 HSPs)
chr1 (62-111)||(5878780-5878828)
chr1 (62-111)||(5874891-5874939)
[»] chr7 (1 HSPs)
chr7 (78-111)||(20431259-20431292)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 11427136 - 11427380
Alignment:
Q  1 catcttgatactatgaaaatgatgtatgctccctaaaatcagcttcaaattaaattagtggtcatcacacaaagataaatattgaatcataccttatatt 100  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11427136 catcttgataccatgaaaatgatgtatgctccctaaaatcaccttcaaattaaattagtggtcatcacacaaagataaatattgaatcataccttatatt 11427235  T
Q  101 attaattgtcaaagaaaacacgttaatcaaagaaattacattggaagcatcagtcgccaacgaggaaagaaaggacagagaaaagatcatccacaaccaa 200  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11427236 attaattgtcaaagaaaacacgttaatcaaagaaattacactcgaagcatcggtcgccaacgaggaaagaaaggacagagaaaagatcatccacaaccaa 11427335  T
Q  201 agcatgagaaaggtttcactgcagctccaacaaaagcagaagatt 245  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  11427336 agcatgagaaaggtttcactacagctccaacaaaagcagaagatt 11427380  T

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Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 287 - 430
Target Start/End: Original strand, 11427422 - 11427573
Alignment:
Q  287 aggagaagcaacgcttagtggaatggtatacatacctgtaattaaacaatggtggatc--------gaattggcaaggaagcgataccaaagagaaaaaa 378  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||        ||||| ||||||||||||||||||||||||||      
T  11427422 aggagaagcaacgcttagtggaatcgtatacatacctgtaattaaacaatggtggatccatcgatcgaattagcaaggaagcgataccaaagagaaaatc 11427521  T
Q  379 tttgaacactattgacttgtaagacaatcgacttagaatcgttatattcaca 430  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11427522 tttgaacactattgacttgtaagacgatcgacttagaatcgttatattcaca 11427573  T

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Target: chr3; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 112 - 238
Target Start/End: Original strand, 11430984 - 11431110
Alignment:
Q  112 aagaaaacacgttaatcaaagaaattacattggaagcatcagtcgccaacgaggaaagaaaggacagagaaaagatcatccacaaccaaagcatgagaaa 211  Q
    |||||||||||||||||||| |||||||| | ||||||||  |||||||| | |||| |||||||||||||||||||||||||||| |||||||||||||    
T  11430984 aagaaaacacgttaatcaaataaattacactcgaagcatcgatcgccaaccacgaaacaaaggacagagaaaagatcatccacaacaaaagcatgagaaa 11431083  T
Q  212 ggtttcactgcagctccaacaaaagca 238  Q
    ||||| ||||||| |||||||||||||    
T  11431084 ggttttactgcagttccaacaaaagca 11431110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 11431159 - 11431216
Alignment:
Q  287 aggagaagcaacgcttagtggaatggtatacatacctgtaattaaacaatggtggatc 344  Q
    |||||||||| ||| |||||||||  ||| |||||||||| ||||| |||||||||||    
T  11431159 aggagaagcagcgcatagtggaatcatatgcatacctgtagttaaagaatggtggatc 11431216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 5878780 - 5878828
Alignment:
Q  62 tcatcacacaaagataaatattgaatcataccttatattattaattgtca 111  Q
    |||||||||||| |||||||||||||||||||||||||| | ||||||||    
T  5878780 tcatcacacaaa-ataaatattgaatcataccttatattttcaattgtca 5878828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 5874891 - 5874939
Alignment:
Q  62 tcatcacacaaagataaatattgaatcataccttatattattaattgtca 111  Q
    |||||||||||  |||||||||||||||||||||||||| | ||||||||    
T  5874891 tcatcacacaac-ataaatattgaatcataccttatattgtcaattgtca 5874939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 111
Target Start/End: Original strand, 20431259 - 20431292
Alignment:
Q  78 aatattgaatcataccttatattattaattgtca 111  Q
    ||||||||||||||||||||||| ||||||||||    
T  20431259 aatattgaatcataccttatattgttaattgtca 20431292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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