View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6392_low_25 (Length: 445)
Name: NF6392_low_25
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 6 - 441
Target Start/End: Original strand, 114773 - 115213
Alignment:
| Q |
6 |
agatgcaaattatgttttctttttatgttgctatttcaactttttgagcttatgaaatttatgttttcagaaaagatatttgtttgttgtgttattataa |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
114773 |
agatacaaattatgttttctttttatgttgctatttcaactttttgagcttatgaaatttatgttttcagaaaagatatttgtttgttgtgttattataa |
114872 |
T |
|
| Q |
106 |
aattaaaaatgaacctaaatcgtagaagagtttagaggatgattgtgatgaattaaactaatg-----aaatggatgaattacatgaaaatatgaatcat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
114873 |
aattaaaaatgaacctaaatcgtagaagagtttagaggatgattgtgatgaattaaactaatgaaatgaaatggatgaattacatgaaaatatgaatcat |
114972 |
T |
|
| Q |
201 |
gatacaaagttcatgacacgattacgcaatccaactaactgcctcaataaactaactaactccactgacttgttcaacaagtcactagcatactaactaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
114973 |
gatacaaagttcatgacacgattacgaaatccaactaactgcctcaataaactaactaactccactgacttgttcaacaagtcactagcatactaactaa |
115072 |
T |
|
| Q |
301 |
aacagctaattgcacaatatgaatcaattcacgaatcgattcactgcttacttgtattacaagtaaaagtaattattcataaacaagaattatctcacaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
115073 |
aacagctaattgcacaatatgaatcaattcacgaatcgattcactgcttacttgtattacaagtaaaagtaattattcataaacaagaattatctcacaa |
115172 |
T |
|
| Q |
401 |
cagttacatgcaacttgttagattcattagaatttaatttt |
441 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
115173 |
cagttacatggaacttgttagattcattagaatttaatttt |
115213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 243 - 441
Target Start/End: Complemental strand, 36330092 - 36329904
Alignment:
| Q |
243 |
ctcaataaactaactaactccactgacttgttcaacaagtcactagcatactaactaaaacagctaattgcacaatatgaatcaattcacgaatcgattc |
342 |
Q |
| |
|
||||| ||||||| ||||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||| |||||||||| |||||||||| |
|
|
| T |
36330092 |
ctcaacaaactaagtaactcctctgacttgttcaacaagtcacta----actaactaaaacagttatttgcacaatataaatcaattcatgaatcgattc |
36329997 |
T |
|
| Q |
343 |
actgcttacttgtattacaagtaaaagtaattattcataaacaagaattatctcacaacagttacatgcaacttgttagattcattagaatttaatttt |
441 |
Q |
| |
|
||| |||||||| ||||||| |||||||||| |||| | |||||||||||||||| ||| || |||||||||||||| |||||| |||||||| |
|
|
| T |
36329996 |
actacttacttgaattacaa------gtaattattcctaaatatgaattatctcacaacaattagatagaacttgttagattcgttagaacttaatttt |
36329904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University