View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_low_26 (Length: 423)
Name: NF6392_low_26
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 2 - 408
Target Start/End: Complemental strand, 11102334 - 11101917
Alignment:
| Q |
2 |
atataagggattgcaccaccaaaaatgatagtcgaaaacaa----------tttcacattcaaccatcnnnnnnntggaagcttaactttgtcaagtaaa |
91 |
Q |
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||||||||||||||||||||||||||||||||||||||| | | |||||||||||||| ||||||||||||||||||||||||| |
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| T |
11102334 |
atataagggattgcaccaccaaaaatgatagtcgaaaacgaaggtggcatatatcacattcaaccattaaaaagatggaagcttaactttgtcaagtaaa |
11102235 |
T |
|
| Q |
92 |
tgttgcgggtttttctcctcatactaaaaaataatattgcttctttctttccaaattactcaaacacatgaaagtcaaattagatgtatagcagatcata |
191 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11102234 |
tgttgcgggtttttctcctcatattaaaaaataatattgcttctttctttccaaattactcaaacacatgaaagtcaaattagatgtatagcagatcata |
11102135 |
T |
|
| Q |
192 |
ctacc--nnnnnnnnngatgtaaagccgatctagaattcttagagcatcctcctatatgtctaaattgaattaaatgatacatgaggcgcgccaaattca |
289 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11102134 |
ctaccaaaaaaaaaaagatgtaaagccgatctagaattcttagagcatcctcctatatgtctaaattgaattaaatgatacatgaggcacgccaaattca |
11102035 |
T |
|
| Q |
290 |
ccgcatcgaaacatctccaatgtgaaaccaatgactaaaatctttcacnnnnnnnntcacatcacaagaatcgatggtccgcatcttcatggttaccaca |
389 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11102034 |
ccgcatcgaaacatatccaatgtgaaaccaatgactaaaatctttca-aaaaaaaatcacatcacaagaatcgatggcccgcatcttcatggttaccaca |
11101936 |
T |
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| Q |
390 |
acctcccacacaaagttgt |
408 |
Q |
| |
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||||||||||||||||||| |
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| T |
11101935 |
acctcccacacaaagttgt |
11101917 |
T |
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