View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6392_low_3 (Length: 716)

Name: NF6392_low_3
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6392_low_3
NF6392_low_3
[»] chr2 (6 HSPs)
chr2 (13-697)||(5768342-5769026)
chr2 (13-637)||(5829422-5830046)
chr2 (20-636)||(5826856-5827472)
chr2 (20-252)||(5794832-5795064)
chr2 (13-89)||(27562806-27562882)
chr2 (16-89)||(22142901-22142974)
[»] chr6 (2 HSPs)
chr6 (24-615)||(29326947-29327538)
chr6 (183-224)||(3426377-3426418)
[»] chr1 (3 HSPs)
chr1 (13-150)||(33815182-33815319)
chr1 (13-150)||(33874652-33874789)
chr1 (177-282)||(27810413-27810518)
[»] chr3 (2 HSPs)
chr3 (16-89)||(38508530-38508603)
chr3 (177-282)||(42691571-42691676)
[»] chr4 (6 HSPs)
chr4 (180-274)||(29933973-29934067)
chr4 (180-274)||(51149099-51149193)
chr4 (180-274)||(51159962-51160056)
chr4 (180-274)||(51202661-51202755)
chr4 (570-603)||(29934449-29934482)
chr4 (570-603)||(51159544-51159577)
[»] chr7 (1 HSPs)
chr7 (153-214)||(41174385-41174446)


Alignment Details
Target: chr2 (Bit Score: 653; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 13 - 697
Target Start/End: Complemental strand, 5769026 - 5768342
Alignment:
Q  13 catcagtaatcttcatcaacacttcatgtcttcccttttcagccaccaccccatttttaatcacggctatagtatcagctcctcgaattgttgtaagacg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5769026 catcagtaatcttcatcaacacttcatgtcttcccttttcagccaccaccccatttttaatcacggctatagtatcagcccctcgaattgttgtaagacg 5768927  T
Q  113 gtgagccaccaccacagtagttctgttcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatca 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5768926 gtgagccaccaccacagtagttctgttcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcgtca 5768827  T
Q  213 agcaaaagtattttggggtttttcagcatggctcttgcaatagcaatacgctgcttctgtcctcctgatagctgggtgcctctttccccgacagaggtgt 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5768826 agcaaaagtattttggggtttttcagcatggctcttgcaatagcaatacgctgcttctgtcctcctgatagctgtgtgcctctttccccgacagaggtgt 5768727  T
Q  313 cataaccatttggaagagaacttgtgaaattgtgtgcattggctgctttagctgctgcaattatctcatcctccgtagcacctccttctttgccataagc 412  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5768726 cataaccatttggaagagagcttatgaaattgtgtgcattggctgctttagctgctgcaattatctcatcctccatagcacctccttctttgccataagc 5768627  T
Q  413 tatgttggtacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtctgaaagtttttatatccact 512  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5768626 tatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtctgaaagtttttatatccact 5768527  T
Q  513 ccatctagtaatatacgtccagagtcagggttataaaatctctctaagagacttataactgttgattttccactgccactttctccaaccaaagcagcag 612  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5768526 ccatctagtaatatacgtccagagtcagggttataaaatctctctaagagacttataactgttgattttccactgccactttctccaaccaaagcaacag 5768427  T
Q  613 tctacataaaaatatatcaacaattatctcacatgttctcaaatgagaaatatttttctcaactcattaattatgacatcgctaa 697  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5768426 tctacataaaaatatatcaacaattatctcacatgttctcaaatgagaaatatttttctcaactcattaattatgacatcgctaa 5768342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 13 - 637
Target Start/End: Original strand, 5829422 - 5830046
Alignment:
Q  13 catcagtaatcttcatcaacacttcatgtcttcccttttcagccaccaccccatttttaatcacggctatagtatcagctcctcgaattgttgtaagacg 112  Q
    ||||||||||| |||||||| | |||||||||||||||||||||||| ||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  5829422 catcagtaatcctcatcaactcatcatgtcttcccttttcagccaccgccccatttttaattaccgctatagtatcagcccctcgaattgttgtaagacg 5829521  T
Q  113 gtgagccaccaccacagtagttctgttcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatca 212  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5829522 gtgagctaccaccacagtagttctgttcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatca 5829621  T
Q  213 agcaaaagtattttggggtttttcagcatggctcttgcaatagcaatacgctgcttctgtcctcctgatagctgggtgcctctttccccgacagaggtgt 312  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||| || || || ||||||||||| || ||||| ||||    
T  5829622 agcaaaagtattttggggttttttagcatggttcttgcaatagcaatgcgctgcttctgtcctccggacagttgcgtgcctctttctccaacagacgtgt 5829721  T
Q  313 cataaccatttggaagagaacttgtgaaattgtgtgcattggctgctttagctgctgcaattatctcatcctccgtagcacctccttctttgccataagc 412  Q
    |||| |||| |||||||  |||| ||||  |||||||||| ||||| |||||||||||||| ||||||||||| |||||||| |||||||| |||||| |    
T  5829722 catatccatctggaagattacttatgaagctgtgtgcatttgctgcgttagctgctgcaatgatctcatcctctgtagcacccccttcttttccataacc 5829821  T
Q  413 tatgttggtacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtctgaaagtttttatatccact 512  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||| | |||||||    
T  5829822 tatgttagcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaccccatttgttgtctcaaccagcttaatctgaaagttttgagatccact 5829921  T
Q  513 ccatctagtaatatacgtccagagtcagggttataaaatctctctaagagacttataactgttgattttccactgccactttctccaaccaaagcagcag 612  Q
    ||||||||||||||||||||||| | ||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||  ||    
T  5829922 ccatctagtaatatacgtccagaattagggtcataaaatctctctaagaggctgataactgttgattttccactgccactttctccaaccaaggcaatag 5830021  T
Q  613 tctacataaaaatatatcaacaatt 637  Q
    ||| || | | |||||||| |||||    
T  5830022 tctgcaaagacatatatcatcaatt 5830046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 20 - 636
Target Start/End: Complemental strand, 5827472 - 5826856
Alignment:
Q  20 aatcttcatcaacacttcatgtcttcccttttcagccaccaccccatttttaatcacggctatagtatcagctcctcgaattgttgtaagacggtgagcc 119  Q
    ||||||||||||||  |||||||| ||||| ||||| | |||||||||||| |  || || ||| ||||||| |||  ||| |||| |||||| ||||||    
T  5827472 aatcttcatcaacaaatcatgtctacccttctcagcaatcaccccatttttcactacagcgataatatcagcacctttaatcgttgcaagacgatgagcc 5827373  T
Q  120 accaccacagtagttctgttcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatcaagcaaaa 219  Q
    || || |||||||||||||| ||||| |||||||||| |||||||||||||| ||| |||||||||||||| |||||||| || ||||||||||| ||||    
T  5827372 acaacaacagtagttctgttaacactgactctatctaaagcctcttgaactacacgttctgactcagcatcgagtgcactggttgcctcatcaagtaaaa 5827273  T
Q  220 gtattttggggtttttcagcatggctcttgcaatagcaatacgctgcttctgtcctcctgatagctgggtgcctctttccccgacagaggtgtcataacc 319  Q
    ||||| | ||||||||||  || ||||||||||| || ||||| || || ||||| ||||||| ||| ||||||||||| || || || || |  |||||    
T  5827272 gtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgcctaccgaagtattgtaacc 5827173  T
Q  320 atttggaagagaacttgtgaaattgtgtgcattggctgctttagctgctgcaattatctcatcctccgtagcacctccttctttgccataagctatgttg 419  Q
    |  ||||||||| ||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5827172 acctggaagagagcttatgaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttctttgccataagctatgttg 5827073  T
Q  420 gtacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtctgaaagtttttatatccactccatcta 519  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||| || ||||||||    
T  5827072 gcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatttgttgtctcaaccagcttagtttgaaagttttgatattcagtccatcta 5826973  T
Q  520 gtaatatacgtccagagtcagggttataaaatctctctaagagacttataactgttgattttccactgccactttctccaaccaaagcagcagtctacat 619  Q
    |||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  5826972 gtaatatatgtccagaatcagggttataaaatctctccaagagacttataactgttgattttccactgccactttctccaaccaaggcaacagtctacat 5826873  T
Q  620 aaaaatatatcaacaat 636  Q
    | |||||||||||||||    
T  5826872 ataaatatatcaacaat 5826856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 5795064 - 5794832
Alignment:
Q  20 aatcttcatcaacacttcatgtcttcccttttcagccaccaccccatttttaatcacggctatagtatcagctcctcgaattgttgtaagacggtgagcc 119  Q
    |||||||||||| |  |||||||| ||||| ||||  | |||||||||||| |  || |||||  ||||||| |||  ||| |||| |||||| ||||||    
T  5795064 aatcttcatcaataaatcatgtctacccttctcagtaatcaccccatttttcacaacagctatgatatcagcacctttaatcgttgcaagacgatgagcc 5794965  T
Q  120 accaccacagtagttctgttcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatcaagcaaaa 219  Q
    || || |||||||||||||| ||||| |||||||||| |||||||||||||| | | |||||||||||||| |||||||| || ||||||||||| ||||    
T  5794964 acaacaacagtagttctgttaacactgactctatctaaagcctcttgaactacatgttctgactcagcatcgagtgcactggttgcctcatcaagtaaaa 5794865  T
Q  220 gtattttggggtttttcagcatggctcttgcaa 252  Q
    ||||| | |||| |||||  || ||||||||||    
T  5794864 gtattctagggtctttcaatatagctcttgcaa 5794832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 27562882 - 27562806
Alignment:
Q  13 catcagtaatcttcatcaacacttcatgtcttcccttttcagccaccaccccatttttaatcacggctatagtatca 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  27562882 catcagtaatcttcatcaacacttcatgtcttcccttttcagccacctccccgtttttaatcacggctatagtatca 27562806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 22142901 - 22142974
Alignment:
Q  16 cagtaatcttcatcaacacttcatgtcttcccttttcagccaccaccccatttttaatcacggctatagtatca 89  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  22142901 cagtaatcttcatcaacacttcatgtcttcccttttcagccacctccccatttttaattacggctatagtatca 22142974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 24 - 615
Target Start/End: Original strand, 29326947 - 29327538
Alignment:
Q  24 ttcatcaacacttcatgtcttcccttttcagccaccaccccatttttaatcacggctatagtatcagctcctcgaattgttgtaagacggtgagccacca 123  Q
    ||||||||| | |||||||||||||||||||| |||| ||||||||| || || |||||||||||||| |||||||||||||||||||| |||||||| |    
T  29326947 ttcatcaactcatcatgtcttcccttttcagcaaccatcccattttttattactgctatagtatcagcgcctcgaattgttgtaagacgatgagccacga 29327046  T
Q  124 ccacagtagttctgttcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatcaagcaaaagtat 223  Q
      |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  29327047 tgacagtagttctgttcaaactcactctatctagagcctcttgaactatacgctctgactcggcatcaagtgcacttgttgcctcatcaagcaaaagtat 29327146  T
Q  224 tttggggtttttcagcatggctcttgcaatagcaatacgctgcttctgtcctcctgatagctgggtgcctctttccccgacagaggtgtcataaccattt 323  Q
    ||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| || ||||| |||||||||||||      
T  29327147 tttagggtttttcagcatggctcttgcaatcgcaatgcgctgcttctgtcctccagatagttgtgtgcctctttcgccaacagaagtgtcataaccatca 29327246  T
Q  324 ggaagagaacttgtgaaattgtgtgcattggctgctttagctgctgcaattatctcatcctccgtagcacctccttctttgccataagctatgttggtac 423  Q
    |||||||||||| |||| ||||||||||||||||| || |||||||| || ||||||||||||||||||||  ||||||| ||||||||||||||||  |    
T  29327247 ggaagagaacttatgaagttgtgtgcattggctgcgttcgctgctgctatgatctcatcctccgtagcaccatcttctttaccataagctatgttggcgc 29327346  T
Q  424 gaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtctgaaagtttttatatccactccatctagtaa 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  29327347 gaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatttgttgtctcaaccagcttattctgaaagttttgatatccactccatctagtaa 29327446  T
Q  524 tatacgtccagagtcagggttataaaatctctctaagagacttataactgttgattttccactgccactttctccaaccaaagcagcagtct 615  Q
    ||  ||||| || | ||||| |||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  29327447 tacgcgtccggaattagggtcataaaatctctctaagaggctgataactgttgattttccactgccgctttctccaaccaaagcaacagtct 29327538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 3426377 - 3426418
Alignment:
Q  183 tcagcatcaagtgcacttgtcgcctcatcaagcaaaagtatt 224  Q
    ||||| ||||||||||||||||| |||||||| |||||||||    
T  3426377 tcagcgtcaagtgcacttgtcgcttcatcaagtaaaagtatt 3426418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 7e-48; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 13 - 150
Target Start/End: Complemental strand, 33815319 - 33815182
Alignment:
Q  13 catcagtaatcttcatcaacacttcatgtcttcccttttcagccaccaccccatttttaatcacggctatagtatcagctcctcgaattgttgtaagacg 112  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||  |||||||||||| || ||||||| ||| ||| ||||||||||||||||    
T  33815319 catcagtaatattcatcaacacttcatgtcttccctttttagccaccaccttatttttaatcaccgccatagtattagcccctagaattgttgtaagacg 33815220  T
Q  113 gtgagccaccaccacagtagttctgttcacactcactc 150  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  33815219 gtgaggcaccaccacagtagttctgttcacactcactc 33815182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 13 - 150
Target Start/End: Complemental strand, 33874789 - 33874652
Alignment:
Q  13 catcagtaatcttcatcaacacttcatgtcttcccttttcagccaccaccccatttttaatcacggctatagtatcagctcctcgaattgttgtaagacg 112  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||  |||||||||||| || ||||||| ||| ||| ||||||||||||||||    
T  33874789 catcagtaatattcatcaacacttcatgtcttccctttttagccaccaccttatttttaatcaccgccatagtattagcccctagaattgttgtaagacg 33874690  T
Q  113 gtgagccaccaccacagtagttctgttcacactcactc 150  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  33874689 gtgaggcaccaccacagtagttctgttcacactcactc 33874652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 282
Target Start/End: Complemental strand, 27810518 - 27810413
Alignment:
Q  177 tctgactcagcatcaagtgcacttgtcgcctcatcaagcaaaagtattttggggtttttcagcatggctcttgcaatagcaatacgctgcttctgtcctc 276  Q
    ||||||||||  || ||||||||||| |||||||| || | ||| |||   || ||||||||||| || |||||||| || || | |||||| |||||||    
T  27810518 tctgactcagagtccagtgcacttgtagcctcatctaggagaagaattgctggatttttcagcattgcccttgcaattgctattctctgcttttgtcctc 27810419  T
Q  277 ctgata 282  Q
    ||||||    
T  27810418 ctgata 27810413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 38508530 - 38508603
Alignment:
Q  16 cagtaatcttcatcaacacttcatgtcttcccttttcagccaccaccccatttttaatcacggctatagtatca 89  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38508530 cagtaatcttcatcaacacttcatgtcttcccttttcagccacctccccatttttaatcacggctatagtatca 38508603  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 282
Target Start/End: Original strand, 42691571 - 42691676
Alignment:
Q  177 tctgactcagcatcaagtgcacttgtcgcctcatcaagcaaaagtattttggggtttttcagcatggctcttgcaatagcaatacgctgcttctgtcctc 276  Q
    |||||||| | |||||| ||||| || ||||||||||||||||| ||    || |||||||| ||||||||||| || ||||| | ||| ||||| ||||    
T  42691571 tctgactctgaatcaagggcactagtggcctcatcaagcaaaagaatgggaggatttttcagtatggctcttgcgatcgcaattctctgtttctgacctc 42691670  T
Q  277 ctgata 282  Q
    ||||||    
T  42691671 ctgata 42691676  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 180 - 274
Target Start/End: Original strand, 29933973 - 29934067
Alignment:
Q  180 gactcagcatcaagtgcacttgtcgcctcatcaagcaaaagtattttggggtttttcagcatggctcttgcaatagcaatacgctgcttctgtcc 274  Q
    |||||||||||||||||||| || || ||||| || || |||||||| || || |||| ||  ||||||||||| || |  ||||||||||||||    
T  29933973 gactcagcatcaagtgcactagttgcttcatctagtaatagtattttcggattcttcaccaacgctcttgcaattgccacccgctgcttctgtcc 29934067  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 180 - 274
Target Start/End: Complemental strand, 51149193 - 51149099
Alignment:
Q  180 gactcagcatcaagtgcacttgtcgcctcatcaagcaaaagtattttggggtttttcagcatggctcttgcaatagcaatacgctgcttctgtcc 274  Q
    |||||||||||||||||||| || || ||||| || || |||||||| || || ||||  || ||||| ||||| || | |||||||||||||||    
T  51149193 gactcagcatcaagtgcactagttgcttcatctagtaatagtatttttggattcttcactatagctctcgcaattgccacacgctgcttctgtcc 51149099  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 180 - 274
Target Start/End: Complemental strand, 51160056 - 51159962
Alignment:
Q  180 gactcagcatcaagtgcacttgtcgcctcatcaagcaaaagtattttggggtttttcagcatggctcttgcaatagcaatacgctgcttctgtcc 274  Q
    |||||||||||||||||||| || || ||||| || || |||||||| || || ||||  || |||| |||||| || | |||||||||||||||    
T  51160056 gactcagcatcaagtgcactagttgcttcatctagtaatagtatttttggattcttcactatagctcgtgcaattgccacacgctgcttctgtcc 51159962  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 180 - 274
Target Start/End: Complemental strand, 51202755 - 51202661
Alignment:
Q  180 gactcagcatcaagtgcacttgtcgcctcatcaagcaaaagtattttggggtttttcagcatggctcttgcaatagcaatacgctgcttctgtcc 274  Q
    |||||||||||||||||||| || || ||||| || || |||||||| || || ||||  || ||||| ||||| || | |||||||||||||||    
T  51202755 gactcagcatcaagtgcactagttgcttcatctagtaatagtatttttggattcttcactatagctctcgcaattgccacacgctgcttctgtcc 51202661  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 570 - 603
Target Start/End: Original strand, 29934449 - 29934482
Alignment:
Q  570 actgttgattttccactgccactttctccaacca 603  Q
    ||||||||||||||||| ||||||||||||||||    
T  29934449 actgttgattttccacttccactttctccaacca 29934482  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 570 - 603
Target Start/End: Complemental strand, 51159577 - 51159544
Alignment:
Q  570 actgttgattttccactgccactttctccaacca 603  Q
    ||||||||||||||||| ||||||||||||||||    
T  51159577 actgttgattttccacttccactttctccaacca 51159544  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 41174385 - 41174446
Alignment:
Q  153 tctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatcaag 214  Q
    ||||| ||||||||||||   | |||||| |||||||||||||||||||| ||||| |||||    
T  41174385 tctagcgcctcttgaactgatctctctgattcagcatcaagtgcacttgttgcctcgtcaag 41174446  T

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