View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_low_30 (Length: 414)
Name: NF6392_low_30
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 33921320 - 33920941
Alignment:
| Q |
18 |
actctggcggaccattctgttcacatcaaaatcgccaaaacaattcggatttcaccaaatagaggaagccttgggccatcttcatccgctcacttgagtt |
117 |
Q |
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| T |
33921320 |
actctggcggaccattctgttcacatcaaaatcgccaaaacaattcggatttcaccaaataggggaagccttgggccatcttcatccgctcacttgagtt |
33921221 |
T |
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| Q |
118 |
catgacttgcatctgggacaagtggtcaagtggattacactacactaaaagatcaattgatctttttaatagtgataagattgacgtcaaagaattcgga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33921220 |
catgacttgcatctgggacaagtggtcaagtggattacactacactaaaagatcaattgatctttttaatagtgataagattgacgtcaaagaattcgga |
33921121 |
T |
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| Q |
218 |
tacattaatagcgagtgtgaacgnnnnnnnnnnnnccatttggaaaactcgtgctgagtttattaagataaacaaatgatcggtagctcacgctccatca |
317 |
Q |
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|||||||||| |||||| ||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33921120 |
gacattaataggtagtgtggacgttttttcttttttcatttggaaaactcgtgttgagtttattaagagaaacaaatgatcggtagctcacgctccatca |
33921021 |
T |
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| Q |
318 |
aggatagctagatgtggcccacatctctagctagttctcaaattttcattgatgtcccaacatatactggatatgaacac |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||| || ||||||| |
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| T |
33921020 |
aggatagctagatgtggcccacatctctagctagttctcatattttcattgatgttccaacatgtactgaatttgaacac |
33920941 |
T |
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