View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6392_low_31 (Length: 406)
Name: NF6392_low_31
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_31 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 7 - 391
Target Start/End: Complemental strand, 38786656 - 38786272
Alignment:
| Q |
7 |
atggacatcatctattctatgaattttaaccacatgtctcgataagacctatccaaaaaccttgattagaaaaaatcaaataaagacaacaaatatgtac |
106 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38786656 |
atggacctcatatattctatgaattttaaccacatgtctcgataagacctatccaaaaaccttgattagaaaaaatcaaataaagacaacaaatatgtac |
38786557 |
T |
|
| Q |
107 |
acagttccactgtcaccaaaattttgagtcacccttttatcagaaaacttgaaagaacaccgtgcgaggtgtcaccaccatgaccctctaccctgtttca |
206 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38786556 |
acagttccactgtcatcaaaattttgagtcacccttttatcagaaaacttgaaagaacaacgtgcgaggtgtcaccaccatgatcctctaccctgtttca |
38786457 |
T |
|
| Q |
207 |
ttattctgtatttaagcttgaatgttattatgataactaagctagtgcatccatcaatgaatgattctcctctggtttgtagaaccatgaacatcatgaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38786456 |
ttattctgtatttaagcttgaatgttattatgataactaagctagtgcatccatcaatgaatgattctcctctggtttgtagaaccatgaacatcatgaa |
38786357 |
T |
|
| Q |
307 |
acttcaaagatttggaccagttagtaatcgttcatggataaagacttcaagatttggtgagaagccattatggtttagacccatt |
391 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38786356 |
acttcaaagatttggaccggttagtaatcgttcatggataaagacttcaagatttggtgagaagccattatggtttagacccatt |
38786272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University