View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6392_low_33 (Length: 395)
Name: NF6392_low_33
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_33 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 105 - 378
Target Start/End: Original strand, 34825517 - 34825807
Alignment:
| Q |
105 |
tatttgaaattgcttatgttagaattcagttgtcatttaagcttgcatgtcaagcaacaatagtactaatcatatttgcagcacacatgctattcctaag |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34825517 |
tatttgaaattgcttatgttagaattcagttgtcatttaagcttgcatgtcaagcaacaatagtactaatcatatttgcagcacacatgctattcctaag |
34825616 |
T |
|
| Q |
205 |
atatcaataatgcctaaaagaaatacacat-----------------agtagatgtgagtgtgaccaaaacattatcaagcatgatcaatgattgagcct |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34825617 |
atatcaataatgcctaaaagaaatacacatcatgatgtttgcaacatagtagatgtgagtgtgaccaaaacattatcaaccatgatcaatgattgagcct |
34825716 |
T |
|
| Q |
288 |
agaaaaagtgcatacccaatttgtaaagttggctcacactccaactgttgatagagaccatcaccctgagtttgacttggatgccgaccat |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34825717 |
agaaaaagtgcatacccaatttgtaaagttggctcacactccaactgttgatagagaccatcaccctgagtttgacttggatgccgaccat |
34825807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 34825179 - 34825275
Alignment:
| Q |
13 |
ataataatatagatttaatttgtatacaccgattgtatgattgttttttacacatgcatcaggtcagatcacaccacatgtttttgtggagatattt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34825179 |
ataataatatagatttaatttgtatacaccgattgtatgattgttttttacacatgcatcaggtcagatcacaccacatgtttttgtggagatattt |
34825275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University