View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6392_low_35 (Length: 391)

Name: NF6392_low_35
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6392_low_35
NF6392_low_35
[»] chr1 (4 HSPs)
chr1 (25-202)||(38968427-38968604)
chr1 (26-200)||(19033731-19033906)
chr1 (25-165)||(28830745-28830885)
chr1 (269-348)||(38968671-38968750)
[»] chr5 (5 HSPs)
chr5 (25-181)||(3640818-3640975)
chr5 (26-200)||(16085174-16085349)
chr5 (38-167)||(14837186-14837315)
chr5 (26-200)||(16088097-16088271)
chr5 (34-199)||(3627852-3628014)
[»] chr8 (3 HSPs)
chr8 (35-200)||(38643713-38643879)
chr8 (34-200)||(8263371-8263534)
chr8 (35-119)||(32791781-32791865)
[»] chr7 (5 HSPs)
chr7 (34-200)||(47204816-47204983)
chr7 (35-114)||(47204730-47204809)
chr7 (299-348)||(47595208-47595257)
chr7 (12-69)||(8353787-8353844)
chr7 (25-155)||(8360139-8360269)
[»] chr6 (1 HSPs)
chr6 (35-200)||(19229622-19229784)
[»] chr4 (3 HSPs)
chr4 (35-200)||(14058935-14059101)
chr4 (35-200)||(23544572-23544734)
chr4 (25-200)||(22462307-22462483)
[»] chr2 (4 HSPs)
chr2 (35-200)||(7505055-7505220)
chr2 (35-199)||(26968887-26969052)
chr2 (35-200)||(26973414-26973579)
chr2 (25-186)||(17364705-17364867)
[»] chr3 (5 HSPs)
chr3 (35-156)||(53726832-53726953)
chr3 (35-200)||(53731273-53731435)
chr3 (25-200)||(42871932-42872108)
chr3 (349-381)||(3328808-3328840)
chr3 (353-381)||(26628024-26628052)
[»] scaffold0427 (1 HSPs)
scaffold0427 (34-200)||(5684-5850)


Alignment Details
Target: chr1 (Bit Score: 146; Significance: 8e-77; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 38968427 - 38968604
Alignment:
Q  25 aaatttgtgattcttgttgttctgttacctccataactaggagaagtatctgttgtatcctgggtagtttacgcacattgaggcggataaatttcaagga 124  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||| | ||||||||||||| |||||||||||||||| |||||    
T  38968427 aaatttgtgattcttgttgctctgttacctccataactaagagaagtatctgttgaatcctagatagtttacgcacactgaggcggataaattttaagga 38968526  T
Q  125 cagtcctcgtgacgcctcaggttaatactaacatgttcaatttgcaggtttactttctagttaatcttgcagaatccg 202  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38968527 cagtcttcgtgacgcctcaggttaatactaacatgttcaatttgcaggtttactttctagttaatcttgcagaatccg 38968604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 19033906 - 19033731
Alignment:
Q  26 aatttgtgattcttgttgttctgttacctccataactaggagaagtatctgttgtatcctgggtagtttacgcacattgaggcggataaatttcaaggac 125  Q
    |||| |||||||||| |||| |||||||||||| ||||||||||| | ||||||||||||||| ||||| |||||||||||||||||||||| |||||||    
T  19033906 aattggtgattcttgctgttatgttacctccatcactaggagaaggacctgttgtatcctggggagtttgcgcacattgaggcggataaattccaaggac 19033807  T
Q  126 agtcctcgtgacgcctcaggttaatactaacatgttcaa-tttgcaggtttactttctagttaatcttgcagaatc 200  Q
    |||| |||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||  | ||||||||||    
T  19033806 agtcttcgtgacgcctcaggttaatactaacgtgttcaattttgcaggtttactgtctagtttgttttgcagaatc 19033731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 25 - 165
Target Start/End: Complemental strand, 28830885 - 28830745
Alignment:
Q  25 aaatttgtgattcttgttgttctgttacctccataactaggagaagtatctgttgtatcctgggtagtttacgcacattgaggcggataaatttcaagga 124  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||| |||| ||  |||| ||||| || |||| |||| ||||||||| |||| |    
T  28830885 aaatttgtgattcttattgttctgttacctccataactaggagaagaatcggttgaattatgggaagtttgcgtacatggaggtggataaattccaagaa 28830786  T
Q  125 cagtcctcgtgacgcctcaggttaatactaacatgttcaat 165  Q
    |||||||| |||||||| |||||||||||||| ||||||||    
T  28830785 cagtcctcatgacgccttaggttaatactaacgtgttcaat 28830745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 269 - 348
Target Start/End: Original strand, 38968671 - 38968750
Alignment:
Q  269 aaatcaatattactgacgcatcaggtacaacatgtttgagctatttacagttttttaatccttcagttaccttgaaatat 348  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38968671 aaatcaatattactgtcgcatcaggtacaacatgtttgagctatttacagttttttaatccttcagctaccttgaaatat 38968750  T

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Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 25 - 181
Target Start/End: Original strand, 3640818 - 3640975
Alignment:
Q  25 aaatttgtgattcttgttgttctgttacctccataactaggagaagtatctgttgtatcctgggtagtttacgcacattgaggcggataaatttcaagga 124  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||| |||||| |||||||| ||||| |||| ||||||| ||||||||| ||||||    
T  3640818 aaatttgtgattcttgttgctctgttacctccataactaggataagtacctgttgaatcctggggagtttgcgcatattgaggaggataaattccaagga 3640917  T
Q  125 cagtcctcgtgacgcctcaggttaatactaacatgttcaat-ttgcaggtttactttc 181  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  3640918 cagtcctcgtgacgcctcaggttaatactaacgtgttcaatcttgcaggtttactttc 3640975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 16085349 - 16085174
Alignment:
Q  26 aatttgtgattcttgttgttctgttacctccataactaggagaagtatctgttgtatcctgggtagtttacgcacattgaggcggataaatttcaaggac 125  Q
    |||| |||||||||| |||| |||||||||||| ||||||||||| | ||| ||| ||||||| ||||| || ||||||||||||||||||| |||||||    
T  16085349 aattggtgattcttgctgttttgttacctccatcactaggagaaggacctgctgtgtcctggggagtttgcgtacattgaggcggataaattccaaggac 16085250  T
Q  126 agtcctcgtgacgcctcaggttaatactaacatgttcaat-ttgcaggtttactttctagttaatcttgcagaatc 200  Q
    |||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||  | ||||||||||    
T  16085249 agtcttcgtgacgcctgaggttaatactaacgtgttcaatgttgcaggtttactttctagtttgttttgcagaatc 16085174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 38 - 167
Target Start/End: Complemental strand, 14837315 - 14837186
Alignment:
Q  38 ttgttgttctgttacctccataactaggagaagtatctgttgtatcctgggtagtttacgcacattgaggcggataaatttcaaggacagtcctcgtgac 137  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||||||||  ||||| |||||||||||||||| ||||| ||| ||||| | || |||     
T  14837315 ttgttgttctgttacctccatcactaggagaaggatctgatgtatcctggagagtttgcgcacattgaggcggacaaattccaatgacagccttcatgat 14837216  T
Q  138 gcctcaggttaatactaacatgttcaattt 167  Q
    ||||||||||||||||||| ||||||||||    
T  14837215 gcctcaggttaatactaacgtgttcaattt 14837186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 16088271 - 16088097
Alignment:
Q  26 aatttgtgattcttgttgttctgttacctccataactaggagaagtatctgttgtatcctgggtagtttacgcacattgaggcggataaatttcaaggac 125  Q
    |||| |||||| ||||||||||||||||||||| | ||||||| | | ||| ||||||| ||| ||||| |||||||||| | ||||||||| |||||||    
T  16088271 aattggtgattgttgttgttctgttacctccatcattaggagagggacctgctgtatccgggg-agtttgcgcacattgatgtggataaattccaaggac 16088173  T
Q  126 agtcctcgtgacgcctcaggttaatactaacatgttcaa-tttgcaggtttactttctagttaatcttgcagaatc 200  Q
    | || ||||||| ||  |||||||||||||| ||||||| ||||||||||||||||||||||  | ||||||||||    
T  16088172 aatcttcgtgacaccctaggttaatactaacgtgttcaattttgcaggtttactttctagtttgttttgcagaatc 16088097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 34 - 199
Target Start/End: Complemental strand, 3628014 - 3627852
Alignment:
Q  34 attcttgttgttctgttacctccataactaggagaagtatctgttgtatcctgggtagtttacgcacattgaggcggataaatttcaaggacagtcctcg 133  Q
    ||||||| |||||||| |||||||||||| ||||||| | |||||| |||||||  ||||| |||||||||| ||||||||||| ||||||||||  ||     
T  3628014 attcttgctgttctgtaacctccataacttggagaaggacctgttgaatcctggagagtttgcgcacattgaagcggataaattccaaggacagtattcc 3627915  T
Q  134 tgacgcctcaggttaatactaacatgttcaatttgcaggtttactttctagttaatcttgcagaat 199  Q
    |||||||||| |||||||||||| ||   | ||| ||||||||||||||||||  | |||||||||    
T  3627914 tgacgcctcaagttaatactaacgtg---attttacaggtttactttctagtttgttttgcagaat 3627852  T

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Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 35 - 200
Target Start/End: Complemental strand, 38643879 - 38643713
Alignment:
Q  35 ttcttgttgttctgttacctccataactaggagaagtatctgttgtatcctgggtagtttacgcacattgaggcggataaatttcaaggacagtcctcgt 134  Q
    |||||||||||||||||||||||| | ||||||||| | ||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||    
T  38643879 ttcttgttgttctgttacctccatcattaggagaaggacctgctgtatcctggggagtttgcgcacattgaggcggataaatttcaaggacagtcttcgt 38643780  T
Q  135 gacgcctcaggttaatactaacatgttcaa-tttgcaggtttactttctagttaatcttgcagaatc 200  Q
    ||||||||||||||||||||||   ||||| ||||||||||||||||||||||  | ||||||||||    
T  38643779 gacgcctcaggttaatactaacgcattcaattttgcaggtttactttctagtttgttttgcagaatc 38643713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 8263371 - 8263534
Alignment:
Q  34 attcttgttgttctgttacctccataactaggagaagtatctgttgtatcctgggtagtttacgcacattgaggcggataaatttcaaggacagtcctcg 133  Q
    ||||||| |||||||| ||| |||||||| ||||||| | |||||| |||||||| | ||| |||||||||||||||||||||| ||||||||||| |||    
T  8263371 attcttgctgttctgtaaccaccataacttggagaaggacctgttgaatcctggggaatttgcgcacattgaggcggataaattccaaggacagtcttcg 8263470  T
Q  134 tgacgcctcaggttaatactaacatgttcaatttgcaggtttactttctagttaatcttgcagaatc 200  Q
    ||||||||||||||||||||||| ||   | ||| || |||||||||||||||  | ||||||||||    
T  8263471 tgacgcctcaggttaatactaacgtg---attttacatgtttactttctagtttgttttgcagaatc 8263534  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 32791781 - 32791865
Alignment:
Q  35 ttcttgttgttctgttacctccataactaggagaagtatctgttgtatcctgggtagtttacgcacattgaggcggataaatttc 119  Q
    |||||||||||||||||||||||| ||||||||||| | ||  |||||| |||| ||||| |||| |||||| ||||||||||||    
T  32791781 ttcttgttgttctgttacctccatcactaggagaaggacctactgtatcgtggggagtttgcgcatattgagacggataaatttc 32791865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 6e-47; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 47204816 - 47204983
Alignment:
Q  34 attcttgttgttctgttacctccataactaggagaagtatctgttgtatcctgggtagtttacgcacattgaggcggataaatttcaaggacagtcctcg 133  Q
    ||||||| ||||||||||||||||| ||||||||||| | ||| ||||||||||| ||||| ||||||||||||||||||||||  |||||||||| |||    
T  47204816 attcttgctgttctgttacctccatcactaggagaaggacctgctgtatcctgggaagtttgcgcacattgaggcggataaattctaaggacagtcttcg 47204915  T
Q  134 tgacgcctcaggttaatactaacatgttcaa-tttgcaggtttactttctagttaatcttgcagaatc 200  Q
    ||||||||||||||||||||||| | ||||| ||||||| ||||||||||||||  | ||||||||||    
T  47204916 tgacgcctcaggttaatactaacgtattcaattttgcagatttactttctagtttgttttgcagaatc 47204983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 47204730 - 47204809
Alignment:
Q  35 ttcttgttgttctgttacctccataactaggagaagtatctgttgtatcctgggtagtttacgcacattgaggcggataa 114  Q
    |||||| ||||||||||||||||| ||||||||||| | |||||||| |||||  ||||| |||||||||||||||||||    
T  47204730 ttcttgctgttctgttacctccatcactaggagaaggacctgttgtaccctggagagtttgcgcacattgaggcggataa 47204809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 47595208 - 47595257
Alignment:
Q  299 catgtttgagctatttacagttttttaatccttcagttaccttgaaatat 348  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  47595208 catgtttgagctatttactgttttttaatccttcagttaccttgaaatat 47595257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 8353787 - 8353844
Alignment:
Q  12 acatcatcatgaaaaatttgtgattcttgttgttctgttacctccataactaggagaa 69  Q
    |||||| | ||| |||||| | |||||||||||| |||||||||||||||||||||||    
T  8353787 acatcagcctgataaatttataattcttgttgttatgttacctccataactaggagaa 8353844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 8360139 - 8360269
Alignment:
Q  25 aaatttgtgattcttgttgttctgttacctccataactaggagaagtatctgttgtatcctgggtagtttacgcacattgaggcggataaatttcaagga 124  Q
    |||||| | ||||||| |||| |||||||| ||||||||||||||| |  ||||| |||||||  | ||| | ||  |||| ||| |||||||| |||||    
T  8360139 aaatttataattcttggtgttgtgttaccttcataactaggagaagaacttgttgaatcctggagattttgcacattttgatgcgaataaattttaagga 8360238  T
Q  125 cagtcctcgtgacgcctcaggttaatactaa 155  Q
    || || || |||||  |||||| ||||||||    
T  8360239 caatcttcatgacgattcaggtaaatactaa 8360269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 35 - 200
Target Start/End: Complemental strand, 19229784 - 19229622
Alignment:
Q  35 ttcttgttgttctgttacctccataactaggagaagtatctgttgtatcctgggtagtttacgcacattgaggcggataaatttcaaggacagtcctcgt 134  Q
    |||||| ||||||||||||||||| ||||||||||| | |||||||||| |||| ||||| |||||||||||||||||||||| ||||||||||| ||||    
T  19229784 ttcttgctgttctgttacctccatcactaggagaaggacctgttgtatcttggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgt 19229685  T
Q  135 gacgcctcaggttaatactaacatgttcaatttgcaggtttactttctagttaatcttgcagaatc 200  Q
    |||||||||||||||||||||| ||   | ||| ||||||||||||||||||  | ||||||||||    
T  19229684 gacgcctcaggttaatactaacgtg---attttacaggtttactttctagtttgttttgcagaatc 19229622  T

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Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 35 - 200
Target Start/End: Original strand, 14058935 - 14059101
Alignment:
Q  35 ttcttgttgttctgttacctccataactaggagaagtatctgttgtatcctgggtagtttacgcacattgaggcggataaatttcaaggacagtcctcgt 134  Q
    |||||| ||||||||||||||||| ||||||||||| | ||| |||||||| || ||||| |||||||||||||||||||||| ||||||||||| ||||    
T  14058935 ttcttgctgttctgttacctccatcactaggagaaggacctgctgtatcctagggagtttgcgcacattgaggcggataaattccaaggacagtcttcgt 14059034  T
Q  135 gacgcctcaggttaatactaacatgttcaa-tttgcaggtttactttctagttaatcttgcagaatc 200  Q
    ||||||||||||||||||||||   ||||| |||||||||||||||| |||||  | ||||||||||    
T  14059035 gacgcctcaggttaatactaacgcattcaattttgcaggtttactttgtagtttgttttgcagaatc 14059101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 35 - 200
Target Start/End: Original strand, 23544572 - 23544734
Alignment:
Q  35 ttcttgttgttctgttacctccataactaggagaagtatctgttgtatcctgggtagtttacgcacattgaggcggataaatttcaaggacagtcctcgt 134  Q
    |||||| ||||||||||||||||| |||| |||||| ||||| ||||||||||| ||||| |||||||||||| ||||||||| ||||||||||| ||||    
T  23544572 ttcttgctgttctgttacctccatcactaagagaaggatctgctgtatcctggggagtttgcgcacattgaggtggataaattccaaggacagtcttcgt 23544671  T
Q  135 gacgcctcaggttaatactaacatgttcaatttgcaggtttactttctagttaatcttgcagaatc 200  Q
    |||||||||||||||||||||| ||   | ||| ||||||||||||||||||  | ||||||||||    
T  23544672 gacgcctcaggttaatactaacgtg---attttacaggtttactttctagtttgttttgcagaatc 23544734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 25 - 200
Target Start/End: Original strand, 22462307 - 22462483
Alignment:
Q  25 aaatttgtgattcttgttgttctgttacctccataactaggagaagtatctgttgtatcctgggtagtttacgcacattgaggcggataaatttcaagga 124  Q
    |||||| | ||||||| |||| |||||||||||||| ||||||||| | |||||| |||||||| ||||| |||||| ||||||||||||||| ||| ||    
T  22462307 aaatttataattcttgatgttttgttacctccataattaggagaaggacctgttgaatcctggggagtttccgcacactgaggcggataaattccaaaga 22462406  T
Q  125 cagtcctcgtgacgcctcaggttaatactaacatgttcaa-tttgcaggtttactttctagttaatcttgcagaatc 200  Q
    ||||||||||||||||||| |||||||||||| | ||||| ||| || ||||||||||| |||  ||||| ||||||    
T  22462407 cagtcctcgtgacgcctcatgttaatactaacgtattcaattttacaagtttactttctggttcgtcttgtagaatc 22462483  T

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Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 35 - 200
Target Start/End: Complemental strand, 7505220 - 7505055
Alignment:
Q  35 ttcttgttgttctgttacctccataactaggagaagtatctgttgtatcctgggtagtttacgcacattgaggcggataaatttcaaggacagtcctcgt 134  Q
    |||||| ||||||||||||||||| ||||||||||| ||||| ||||||||| | ||||| |||| ||||||||||||||||||||||||||||| ||||    
T  7505220 ttcttgctgttctgttacctccatcactaggagaaggatctgctgtatcctgcg-agtttgcgcatattgaggcggataaatttcaaggacagtcttcgt 7505122  T
Q  135 gacgcctcaggttaatactaacatgttcaa-tttgcaggtttactttctagttaatcttgcagaatc 200  Q
    ||| ||||||||||||||||||   ||||| ||||||||||||||||||||||  | ||||||||||    
T  7505121 gacacctcaggttaatactaacgcattcaattttgcaggtttactttctagtttgttttgcagaatc 7505055  T

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Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 35 - 199
Target Start/End: Complemental strand, 26969052 - 26968887
Alignment:
Q  35 ttcttgttgttctgttacctccataactaggagaagtatctgttgtatcctgggtagtttacgcacattgaggcggataaatttcaaggacagtcctcgt 134  Q
    |||||| ||||||||||||||||| | ||||||||| | ||| ||||||||||| | ||| || ||||||||||||||||||| ||||||||||| ||||    
T  26969052 ttcttgatgttctgttacctccatcattaggagaaggacctgctgtatcctggggattttgcgtacattgaggcggataaattccaaggacagtcttcgt 26968953  T
Q  135 gacgcctcaggttaatactaacatgttcaa-tttgcaggtttactttctagttaatcttgcagaat 199  Q
    |||||||||||||||||||||||  ||||| ||||||||||||||||||||||  | |||||||||    
T  26968952 gacgcctcaggttaatactaacacattcaattttgcaggtttactttctagtttgttttgcagaat 26968887  T

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Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 35 - 200
Target Start/End: Complemental strand, 26973579 - 26973414
Alignment:
Q  35 ttcttgttgttctgttacctccataactaggagaagtatctgttgtatcctgggtagtttacgcacattgaggcggataaatttcaaggacagtcctcgt 134  Q
    |||||| ||||||||||||||||| ||||||||||| | ||||||||||||||  ||||| |||||||||||||||||||| | ||||||||||| | ||    
T  26973579 ttcttgctgttctgttacctccatcactaggagaaggacctgttgtatcctggaaagtttgcgcacattgaggcggataaa-tccaaggacagtctttgt 26973481  T
Q  135 gacgcctcaggttaatactaacatgttcaa-tttgcaggtttactttctagttaatcttgcagaatc 200  Q
    ||||||||||||||||||||||   ||||| ||||||||||||||||||||||  | ||||||||||    
T  26973480 gacgcctcaggttaatactaacgcattcaattttgcaggtttactttctagtttgttttgcagaatc 26973414  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 186
Target Start/End: Complemental strand, 17364867 - 17364705
Alignment:
Q  25 aaatttgtgattcttgttgttctgttacctccataactaggagaagtatctgttgtatcctgggtagtttacgcacattgaggcggataaatttcaagga 124  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||||   || |||  |  |||| |||||    ||||| |||||||||||||||||| |    
T  17364867 aaatttgtgattcatgttgttctgcaacctccataactaggagaagggcctcttgagttatgggaagtttgtttacattaaggcggataaatttcaagta 17364768  T
Q  125 cagtcctcgtgacgcctcaggttaatactaacatgttcaa-tttgcaggtttactttctagtt 186  Q
      |||||||||| || |||| ||||||| ||| | | ||| |||||| |||||||||||||||    
T  17364767 tggtcctcgtgatgcttcagtttaataccaacgtttccaattttgcaagtttactttctagtt 17364705  T

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Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 35 - 156
Target Start/End: Complemental strand, 53726953 - 53726832
Alignment:
Q  35 ttcttgttgttctgttacctccataactaggagaagtatctgttgtatcctgggtagtttacgcacattgaggcggataaatttcaaggacagtcctcgt 134  Q
    |||||| ||||||||||||||||| ||||||||||| | ||| ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| ||||    
T  53726953 ttcttgctgttctgttacctccatcactaggagaaggacctgctgtatcctggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgt 53726854  T
Q  135 gacgcctcaggttaatactaac 156  Q
    ||||||||||||||||||||||    
T  53726853 gacgcctcaggttaatactaac 53726832  T

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Target: chr3; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 35 - 200
Target Start/End: Complemental strand, 53731435 - 53731273
Alignment:
Q  35 ttcttgttgttctgttacctccataactaggagaagtatctgttgtatcctgggtagtttacgcacattgaggcggataaatttcaaggacagtcctcgt 134  Q
    |||||| ||||||||||||||||| ||||||| ||| | ||| ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| ||||    
T  53731435 ttcttgctgttctgttacctccatcactaggaaaaggacctgctgtatcctggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgt 53731336  T
Q  135 gacgcctcaggttaatactaacatgttcaatttgcaggtttactttctagttaatcttgcagaatc 200  Q
    |||||||||||||||||||||| ||   | ||| ||||||| ||||||||||  | ||||||||||    
T  53731335 gacgcctcaggttaatactaacgtg---attttacaggtttcctttctagtttgttttgcagaatc 53731273  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 25 - 200
Target Start/End: Original strand, 42871932 - 42872108
Alignment:
Q  25 aaatttgtgattcttgttgttctgttacctccataactaggagaagtatctgttgtatcctgggtagtttacgcacattgaggcggataaatttcaagga 124  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |  ||||| || ||| | | ||| | |||  |||||| |||||||| ||| |     
T  42871932 aaatttgtgattcttgttgttctgttacctccataactacgagaagaacatgttgaattctgaggaatttgcacactctgaggcagataaattccaatgg 42872031  T
Q  125 cagtcctcgtgacgcctcaggttaatactaacatgttcaa-tttgcaggtttactttctagttaatcttgcagaatc 200  Q
    ||||| |||||||||||||||||||||||||| | ||||| ||| ||||||||||||||| || |||| | ||||||    
T  42872032 cagtcttcgtgacgcctcaggttaatactaacgtattcaattttacaggtttactttctaatttatctcgtagaatc 42872108  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 3328808 - 3328840
Alignment:
Q  349 ataaaggctaaactacacttttcgccccctatg 381  Q
    |||||||||||||| ||||||||||||||||||    
T  3328808 ataaaggctaaactgcacttttcgccccctatg 3328840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 353 - 381
Target Start/End: Original strand, 26628024 - 26628052
Alignment:
Q  353 aggctaaactacacttttcgccccctatg 381  Q
    |||||||||||||||||||||||||||||    
T  26628024 aggctaaactacacttttcgccccctatg 26628052  T

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Target: scaffold0427 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 5684 - 5850
Alignment:
Q  34 attcttgttgttctgttacctccataactaggagaagtatctgttgtatcctgggtagtttacgcacattgaggcggataaatttcaaggacagtcctcg 133  Q
    |||| ||||||||||| |||||||||| ||||||||  |  ||||| |||||| | ||||  |||||||||||||||||||||| ||| ||||||| |||    
T  5684 attcgtgttgttctgtaacctccataattaggagaatgacatgttgaatcctgaggagttagcgcacattgaggcggataaattccaatgacagtcttcg 5783  T
Q  134 tgacgcctcaggttaatactaacatgttcaatttgcaggtttactttctagttaatcttgcagaatc 200  Q
    ||||||||||||||||| ||| |   || | |||||||||||| |||||||||  | ||||||||||    
T  5784 tgacgcctcaggttaatgctatccatttaattttgcaggtttaatttctagtttgttttgcagaatc 5850  T

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