View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6392_low_36 (Length: 390)
Name: NF6392_low_36
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_36 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 8 - 372
Target Start/End: Complemental strand, 14726647 - 14726283
Alignment:
| Q |
8 |
cgaagaaaatcaaagtcttttcttgtagatggtgattgagcgggaagaaatcttataattgcctcttctacgaattgtgttgggatccttgtaagtgctt |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14726647 |
cgaaaaaaatcaaagtcttttcttgtagatggtgattgagcgggaagaaatcttataattgcctcttctacgaattgtgttgggatccttgtaagtgctt |
14726548 |
T |
|
| Q |
108 |
ggagtgatttgggggtgggggtgtagaagctgtcagttgttcttgcgttttttggctacggtgttcctgtgtttgtgggtaggtgggagtctttttggtt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14726547 |
ggagtgatttgggggtgggggtgtagaagctgtcagttgttcttgcgttttttggctacggtgttactgtgtttgtgggtaggtgggagtctttttggtt |
14726448 |
T |
|
| Q |
208 |
tgcagaggcctagttttggttgaatgtgatggttttgtgttggtgtcggatatctgacacgttcagaaatgtcggtactatagagatcagaattgatgcc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14726447 |
tgcagaggcctagttttggttgaatgtgaaggttttgtgttggtgtcggatatctgacacgttcagaaatgtcggtactatagagatcagaattgatgcc |
14726348 |
T |
|
| Q |
308 |
tttctatcatatagtgacgctgggcatgtattggttgtcaaataccgactgctgtcgaatatgat |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14726347 |
tttctatcatatagtgacgctgggcatgtattggttgtcaaataccgactgctgtcgaatatgat |
14726283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 14 - 372
Target Start/End: Original strand, 17596869 - 17597227
Alignment:
| Q |
14 |
aaatcaaagtcttttcttgtagatggtgattgagcgggaagaaatcttataattgcctcttctacgaattgtgttgggatccttgtaagtgcttggagtg |
113 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
17596869 |
aaatcgaagtcttttcttgtagatggcgattgagcgggaagaaatcttataattgcctcctctacggatggtgttgggatccttgtaagtgcttggagtg |
17596968 |
T |
|
| Q |
114 |
atttgggggtgggggtgtagaagctgtcagttgttcttgcgttttttggctacggtgttcctgtgtttgtgggtaggtgggagtctttttggtttgcaga |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17596969 |
atttgggggtgggggtgtagaagctgtcagttgttcttgcgttttttggctacggtgtttctgtgtttgtgggtaggtgggagtctttttggtttgcaga |
17597068 |
T |
|
| Q |
214 |
ggcctagttttggttgaatgtgatggttttgtgttggtgtcggatatctgacacgttcagaaatgtcggtactatagagatcagaattgatgcctttcta |
313 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
17597069 |
ggcctagttttggttgaatgtgacggttttgtgttggtgtcggatatctgacacgttcagaaatgtcggtactatagagatcataattgacgcctttcta |
17597168 |
T |
|
| Q |
314 |
tcatatagtgacgctgggcatgtattggttgtcaaataccgactgctgtcgaatatgat |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17597169 |
tcatatagtgacgctgggcatgtattggttgtcaaataccgactgctgtcgaatatgat |
17597227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University