View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_low_38 (Length: 379)
Name: NF6392_low_38
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_38 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 18304067 - 18303689
Alignment:
| Q |
1 |
atcatcagctatatccatcaacggtgctagagtttccggtgagaatttccttgcaaacagatagggataactggaattcgatttcctaagctggcgtaca |
100 |
Q |
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| T |
18304067 |
atcataagctatatccatcaacggtgctagagtttccggtgagaatttccttgcaaacagataggggtaactggaattcgatttcctaagctggcgtaca |
18303968 |
T |
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| Q |
101 |
agctccggcgacacctcctctcgagtataaagatgcggatgtccgtcagtacaaccagtccagttaactctcgtaagagtaaaaccagtgcagccatcgc |
200 |
Q |
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| T |
18303967 |
agctccggcgacacctcctctcgagtataaagatgcggatgtccgtcagtacaaccagtccagttaactctcgtaagagtaaaacccgtgcagccatcgc |
18303868 |
T |
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| Q |
201 |
gctcctccatcgatagaagagtcggaaagtaatgctcttccgggtaacaggaatacgtatctatacatggaatccgaaacttcttccacaacttttgatc |
300 |
Q |
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| T |
18303867 |
gctcctccatcgatagaagagtcggaaagtaatgctcttccgggtaacaggaatacgtatctatacatggaatccgaaacttcttccacaacttttgatc |
18303768 |
T |
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| Q |
301 |
tcgcagaacaacctttgcatgtttccggttcaggataaagaactgcgagcctttgcgaaaatcctcaaatggaacctcc |
379 |
Q |
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| T |
18303767 |
tcgcagaacaacctttgcatgtttccggttcaggataaagaattgcgagcctttgcgaaaatccttgaatgaaacctcc |
18303689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 18339629 - 18340007
Alignment:
| Q |
1 |
atcatcagctatatccatcaacggtgctagagtttccggtgagaatttccttgcaaacagatagggataactggaattcgatttcctaagctggcgtaca |
100 |
Q |
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| T |
18339629 |
atcatcggctatatccatcagcggagcaagacactccggcgagaatttcctcgcaaatagatatgaataactcgaattcgacaccctcagctgtcgaatt |
18339728 |
T |
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| Q |
101 |
agctccggcgacacctcctctcgagtataaagatgcggatgtccgtcagtacaaccagtccagttaactctcgtaagagtaaaaccagtgcagccatcgc |
200 |
Q |
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| T |
18339729 |
agctccggggaaacctcctccggagtataaagatgaggatgtccatcccaacaaccagtccaattaactctcgtcagtgtaaaaccagtacacccattca |
18339828 |
T |
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| Q |
201 |
gctcctccatcgatagaagagtcggaaagtaatgctcttccgggtaacaggaatacgtatctatacatggaatccgaaacttcttccacaacttttgatc |
300 |
Q |
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| T |
18339829 |
gatcctccatagacaaaagagtgggaaaataatgctcttctggataacaagaatccaaatttacacaaggaatccgaaacttcttccatagcttataatc |
18339928 |
T |
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| Q |
301 |
tcgcagaacaacctttgcatgtttccggttcaggataaagaactgcgagcctttgcgaaaatcctcaaatggaacctcc |
379 |
Q |
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| T |
18339929 |
tctcaccacaacctttgcatgcttcctattcaagataaaaaactgcgaaccaacccgaaaatcctcaaatggaacctcc |
18340007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 18344787 - 18345165
Alignment:
| Q |
1 |
atcatcagctatatccatcaacggtgctagagtttccggtgagaatttccttgcaaacagatagggataactggaattcgatttcctaagctggcgtaca |
100 |
Q |
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| T |
18344787 |
atcatcggcaatattcatcaacggagcaagacattccggcgagaatttcctagcgaatagatatgaataactccaattggagaccctcagctgacgaaaa |
18344886 |
T |
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| Q |
101 |
agctccggcgacacctcctctcgagtataaagatgcggatgtccgtcagtacaaccagtccagttaactctcgtaagagtaaaaccagtgcagccatcgc |
200 |
Q |
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| T |
18344887 |
agctccggcgacacctctgctggagtataaagatgtggatgaccatagacagcaccggtccaattaactctagtcagtgtaaaaccagtacaccccttca |
18344986 |
T |
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| Q |
201 |
gctcctccatcgatagaagagtcggaaagtaatgctcttccgggtaacaggaatacgtatctatacatggaatccgaaacttcttccacaacttttgatc |
300 |
Q |
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|||||||| ||||||||||||| ||| |||||||| || || ||||| ||||| ||| | ||||||||||| ||||||| ||||| | ||||||||| |
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| T |
18344987 |
aatcctccattgatagaagagtcgaaaaataatgctcctctggataacaataatacttatttgtacatggaatctgaaacttgttccatagcttttgatc |
18345086 |
T |
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| Q |
301 |
tcgcagaacaacctttgcatgtttccggttcaggataaagaactgcgagcctttgcgaaaatcctcaaatggaacctcc |
379 |
Q |
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| T |
18345087 |
tctcaacacaacctttgtatgtttccggttcaagataaaaaattgtgaaccaacccgaaaatcctcaaatggaacctcc |
18345165 |
T |
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