View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6392_low_41 (Length: 368)

Name: NF6392_low_41
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6392_low_41
NF6392_low_41
[»] chr4 (5 HSPs)
chr4 (1-363)||(2883192-2883558)
chr4 (1-118)||(2901718-2901835)
chr4 (1-95)||(2872990-2873084)
chr4 (284-363)||(2901396-2901475)
chr4 (279-363)||(2873713-2873797)
[»] chr2 (6 HSPs)
chr2 (1-118)||(44226356-44226473)
chr2 (1-118)||(44237154-44237271)
chr2 (1-95)||(44214209-44214303)
chr2 (280-363)||(44214034-44214117)
chr2 (307-363)||(44237013-44237069)
chr2 (19-114)||(43462954-43463049)
[»] chr7 (5 HSPs)
chr7 (1-118)||(39551714-39551831)
chr7 (7-118)||(39359715-39359826)
chr7 (8-118)||(39568561-39568671)
chr7 (38-118)||(39542498-39542578)
chr7 (1-98)||(39578121-39578218)
[»] chr8 (1 HSPs)
chr8 (16-104)||(4496147-4496235)
[»] chr1 (2 HSPs)
chr1 (25-95)||(2152551-2152621)
chr1 (19-95)||(2164807-2164883)


Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 2883192 - 2883558
Alignment:
Q  1 cctcagagaactgctgcatatattagtcaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaaggtgccaaggtgtcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2883192 cctcagagaactgctgcatatattagtcaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaaggtgccaaggtgtcg 2883291  T
Q  101 gaacacgttatggttagtacttttcgacagagtttgtgcc-nnnnnnnctatataactatcactcgtttctgaaaaatcacacatatgttcggaagtata 199  Q
    || |||||||||||||||||||||||||||||||||||||        |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2883292 gatcacgttatggttagtacttttcgacagagtttgtgccttttttttctatataactgtcactcgtttctgaaaaatcacacatatgttcggaagtata 2883391  T
Q  200 cttccggatag--nnnnnnnnncgtgtttttgttcaaacggcacaaaagccatg-nnnnnnncagaagtataacaagtaatgttttttgtgatccataga 296  Q
    |||||||||||           ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||    
T  2883392 cttccggatagaaaagaaaaaacgtgtttttgttcaaacggcacaaaagccatgttttttttcagaagtataacaagtaatgttttttgtgatccataga 2883491  T
Q  297 cttgttggctgagctgtctagaagagaaaaggaagcaaatatcaagccagacccagatgatgatgtc 363  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  2883492 cttgttggctgagctgtctagaagagaaaaggaagcaaatattaagccagacccagatgttgatgtc 2883558  T

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Target: chr4; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 2901835 - 2901718
Alignment:
Q  1 cctcagagaactgctgcatatattagtcaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaaggtgccaaggtgtcg 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || |    
T  2901835 cctcaaagaactgctgcatatattagtcaacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttg 2901736  T
Q  101 gaacacgttatggttagt 118  Q
    || |||||||||||||||    
T  2901735 gatcacgttatggttagt 2901718  T

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Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 2872990 - 2873084
Alignment:
Q  1 cctcagagaactgctgcatatattagtcaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaaggtgccaagg 95  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  2872990 cctcaaagaactgctgcatatattagtcaacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaagg 2873084  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 284 - 363
Target Start/End: Complemental strand, 2901475 - 2901396
Alignment:
Q  284 tgtgatccatagacttgttggctgagctgtctagaagagaaaaggaagcaaatatcaagccagacccagatgatgatgtc 363  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||||||||||| || |||||||||||||||  |||||||    
T  2901475 tgtgatccacagacttgttgtctgagttgtctagaagagaaaaggaagcaaagattaagccagacccagatattgatgtc 2901396  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 363
Target Start/End: Original strand, 2873713 - 2873797
Alignment:
Q  279 ttttttgtgatccatagacttgttggctgagctgtctagaagagaaaaggaagcaaatatcaagccagacccagatgatgatgtc 363  Q
    ||||||||||| |||||| ||| |  ||||| | | |||||||||||| |||||||| ||||  ||||||||||||  |||||||    
T  2873713 ttttttgtgatgcatagatttgctatctgagttatgtagaagagaaaaagaagcaaagatcataccagacccagatattgatgtc 2873797  T

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Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 44226473 - 44226356
Alignment:
Q  1 cctcagagaactgctgcatatattagtcaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaaggtgccaaggtgtcg 100  Q
    ||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  44226473 cctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaaggtgccaaggagttg 44226374  T
Q  101 gaacacgttatggttagt 118  Q
    || |||||||||||||||    
T  44226373 gatcacgttatggttagt 44226356  T

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Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 44237271 - 44237154
Alignment:
Q  1 cctcagagaactgctgcatatattagtcaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaaggtgccaaggtgtcg 100  Q
    ||||| |||||||| || ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || |    
T  44237271 cctcaaagaactgcggcttatatcagccaacatgatgttcatattggagaaatgactgtgagagaaaccttggctttctcagcaagatgccaaggagttg 44237172  T
Q  101 gaacacgttatggttagt 118  Q
    || |||||||||||||||    
T  44237171 gatcacgttatggttagt 44237154  T

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Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 44214303 - 44214209
Alignment:
Q  1 cctcagagaactgctgcatatattagtcaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaaggtgccaagg 95  Q
    ||||| ||||||||||| ||||| || || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44214303 cctcaaagaactgctgcttatatcagccagcatgatgttcacattggagaaatgactgtgagggaaaccttagctttctcagcaaggtgccaagg 44214209  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 363
Target Start/End: Complemental strand, 44214117 - 44214034
Alignment:
Q  280 tttttgtgatccatagacttgttggctgagctgtctagaagagaaaaggaagcaaatatcaagccagacccagatgatgatgtc 363  Q
    ||||||||||||| |||| || |  ||||||| ||||||||||| |||| ||||||||||||||| |||||||||  |||||||    
T  44214117 tttttgtgatccacagacatgctatctgagctttctagaagagagaaggtagcaaatatcaagcctgacccagatattgatgtc 44214034  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 363
Target Start/End: Complemental strand, 44237069 - 44237013
Alignment:
Q  307 gagctgtctagaagagaaaaggaagcaaatatcaagccagacccagatgatgatgtc 363  Q
    ||||| ||||||||||| |||| ||||||||||||||| |||||||||  |||||||    
T  44237069 gagctttctagaagagagaaggcagcaaatatcaagcctgacccagatattgatgtc 44237013  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 43463049 - 43462954
Alignment:
Q  19 tatattagtcaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaaggtgccaaggtgtcggaacacgttatggt 114  Q
    |||||||| ||| ||||||| ||| | || ||||||||||| |  |||||| ||| ||||||||| || |||||||| || |||||||| ||||||    
T  43463049 tatattagccaaaatgatgtacatttgggtgaaatgactgtaaaagaaaccatggatttctcagctagatgccaaggagttggaacacgatatggt 43462954  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 39551831 - 39551714
Alignment:
Q  1 cctcagagaactgctgcatatattagtcaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaaggtgccaaggtgtcg 100  Q
    ||||| ||||||||||| ||| |   |||| ||||| |||| ||||||||||||||||| || ||||||||||||||||||||||||  |||||| || |    
T  39551831 cctcaaagaactgctgcttatgtggatcaaaatgatcttcacattggagaaatgactgttagagaaaccttggctttctcagcaagggtccaaggagttg 39551732  T
Q  101 gaacacgttatggttagt 118  Q
    |  | |||||||||||||    
T  39551731 ggcctcgttatggttagt 39551714  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 39359715 - 39359826
Alignment:
Q  7 agaactgctgcatatattagtcaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaaggtgccaaggtgtcggaacac 106  Q
    ||||||||||| ||| |   |||| ||||| |||| ||||||||||||||||| || ||||||||||| |||||||| ||   |||||| || ||| | |    
T  39359715 agaactgctgcttatgtggatcaaaatgatcttcacattggagaaatgactgttagagaaaccttggccttctcagctagagtccaaggagttggacctc 39359814  T
Q  107 gttatggttagt 118  Q
    ||||||||||||    
T  39359815 gttatggttagt 39359826  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 39568671 - 39568561
Alignment:
Q  8 gaactgctgcatatattagtcaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaaggtgccaaggtgtcggaacacg 107  Q
    |||||||||||||| |   |||| ||||| |||| |||||||||||||| || || ||||||||||| ||||||||| |   |||||| || ||| | ||    
T  39568671 gaactgctgcatatgtggatcaaaatgatcttcacattggagaaatgacagtaagagaaaccttggccttctcagcacgagtccaaggagttggacctcg 39568572  T
Q  108 ttatggttagt 118  Q
    |||||||||||    
T  39568571 ttatggttagt 39568561  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 39542578 - 39542498
Alignment:
Q  38 ttcatattggagaaatgactgtgagggaaaccttggctttctcagcaaggtgccaaggtgtcggaacacgttatggttagt 118  Q
    |||| ||||||||||||||||| || ||||||||||| ||||| ||||||  |||||| || ||  | |||||||||||||    
T  39542578 ttcacattggagaaatgactgttagagaaaccttggccttctcggcaagggtccaaggagttgggccgcgttatggttagt 39542498  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 39578218 - 39578121
Alignment:
Q  1 cctcagagaactgctgcatatattagtcaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaaggtgccaaggtgt 98  Q
    ||||| ||||||||||| ||| | |||||| | ||| |||| ||||||||| |||| || || ||||| ||||  ||||||||||| | |||||||||    
T  39578218 cctcaaagaactgctgcttatgtcagtcaaaacgatcttcacattggagaattgacagttagagaaactttggaattctcagcaagattccaaggtgt 39578121  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 4496147 - 4496235
Alignment:
Q  16 gcatatattagtcaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaaggtgccaaggtgtcggaac 104  Q
    ||||||||||||||| ||||||||||| |||||||||||||||| |  |||||||| | ||| ||||| || |||||||| || |||||    
T  4496147 gcatatattagtcaaaatgatgttcatgttggagaaatgactgtaaaagaaaccttagatttttcagctagatgccaaggagttggaac 4496235  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 2152621 - 2152551
Alignment:
Q  25 agtcaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaaggtgccaagg 95  Q
    |||||| |||||  ||| |||||||||||||||||||| |||||  |||||||||||||||| || |||||    
T  2152621 agtcaatatgataatcacattggagaaatgactgtgagagaaacactggctttctcagcaagatgtcaagg 2152551  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 2164883 - 2164807
Alignment:
Q  19 tatattagtcaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaaggtgccaagg 95  Q
    ||||| ||||||||||||  ||| |||||||||||||| || || |||||| | |||||||||||||| || |||||    
T  2164883 tatataagtcaacatgataatcacattggagaaatgaccgtaagagaaaccctagctttctcagcaagatgtcaagg 2164807  T

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