View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_low_44 (Length: 360)
Name: NF6392_low_44
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 54879982 - 54879637
Alignment:
| Q |
18 |
aaacagaactatacatgctgtgtggtcaaatatcacattatattgaacaaatgagtcattgaaataaa---------aaatcaataaaacgtattcaatt |
108 |
Q |
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| T |
54879982 |
aaacagaactatacatgctgtgtggtcaaatatcacattatattgaacaaatgagtcattgaaataaatataaaaaaaaattaataaaacgtattcaatt |
54879883 |
T |
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| Q |
109 |
acataaaaatgaaagataaactggtaacaaactggaccgctaaacctttttgaactcgttgtagaatattcacatcctctaaaactaaaaagctaaaagt |
208 |
Q |
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| T |
54879882 |
acacaaaaatgaaagataaaccggtaacaaactgcgtcgctaaacctttttgaactcgttgtagaatattcacatcctctaacactaaaaagtcaaaagt |
54879783 |
T |
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| Q |
209 |
atcaaacataaatggtattaaaacatgtcgatt----gtcaaagctcactttctcgtatttgaacatttttcttaaaattgtttctagaggtgttgtcta |
304 |
Q |
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|||||||||||||| ||||||||||||| |||| |||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54879782 |
atcaaacataaatgatattaaaacatgttgattgtcagtcaaatcttactttctcatatttgaacatttttcttaaaattgtttctagaggtgttgtcta |
54879683 |
T |
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| Q |
305 |
atagtaaatgctctgatactgaaaaaacctcattaaatttgttcat |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54879682 |
atagtaaatgctctgatactgaaaaaacctcattaaatttgttcat |
54879637 |
T |
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