View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_low_50 (Length: 347)
Name: NF6392_low_50
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 3 - 330
Target Start/End: Original strand, 45479364 - 45479692
Alignment:
| Q |
3 |
atcatgataaaaattggagaactgaaataatattttttaaaacttaccaaaaatagtatgatcccccagcggaacaagtgcatcttctggccgaatactt |
102 |
Q |
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| T |
45479364 |
atcatgataaaaattggagaactgaaataatattttttaaaacttaccaaaaatagtatgatcccccagtggaacaagtgcatcttctggccgaatactt |
45479463 |
T |
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| Q |
103 |
cattcggtcttcaacatgagtaaatttaacaatattaaattattaataacctttt-tagaatcttagttggaatatgtgcaacttacgaccaaattttga |
201 |
Q |
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| T |
45479464 |
cattcggtcttcaacatgagtaaatttaacaatattaaattattaataactttttttagaatcttagttggaatatgtgcaacttgcgaccaaattttga |
45479563 |
T |
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| Q |
202 |
attaccaccgtcttctcataaaatcagatgtgtttaattgaggcgtcatacccccacactcacgctaaattttcagttacaaaatactataaaataaaat |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45479564 |
attaccaccgtcttctcataaaatcagatgtgtttaattgaggcgtcatacccccacactcacgctaaattttcatttacaaaatactataaaataaaat |
45479663 |
T |
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| Q |
302 |
tgttttttagtttggtttgggtgataatt |
330 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
45479664 |
tgttttttagtttggtttgggtgataatt |
45479692 |
T |
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