View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6392_low_52 (Length: 340)
Name: NF6392_low_52
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_52 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 340
Target Start/End: Complemental strand, 37554971 - 37554653
Alignment:
| Q |
20 |
ttcaacactgtcatgaaacttgggcaatggaggttgaaaactgttatcattcaaatccaacaacctcgatcaaatattttaatttggtaaaactgcctga |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37554971 |
ttcaacactgtcatgaaacttgggcaatggaggttgaaaactgttatcattcaaatccaacaaccacgatcaaatattttaatttggtaaaactgcctga |
37554872 |
T |
|
| Q |
120 |
aattttaccagttaagttgtttcttgacactatataattgcatgtagtgaatttaacttaccaagtgaatgactcaatgtgccatattgagaccttctct |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37554871 |
aattttaccagttaagttgtttcttgacactatataattgcatgtagtgaatttaacttaccaagtgaatgactcaatgtgcc--attgagaccttctct |
37554774 |
T |
|
| Q |
220 |
aggtaaattgattctcaataactgtgttattgtagatcaccccatgccatgcttctccacaaagattgttactaacccacgtagcaataagagatggtgg |
319 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37554773 |
aggcaaattgattctcaataactgtgttattgtagatcaccccatgccatgcttctccacaaagattgttactaacccacgtagcaagaagagatggtgg |
37554674 |
T |
|
| Q |
320 |
atagttcaaatgatggagaaa |
340 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
37554673 |
atagttcaaatgatggagaaa |
37554653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University