View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6392_low_54 (Length: 327)
Name: NF6392_low_54
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_54 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 4972888 - 4973198
Alignment:
| Q |
1 |
tgtgtttgtgttggtgattctaatcatagttcttctttgcttttggaaaaaaccagcagctaaaataattaaaccttggagtacaggaataagtggacag |
100 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4972888 |
tgtgtttgtgatggtgattctgatcatagttcttctttgcttttggaaaaaaccagcagctaaaataattaaaccttggaatacaggaataagtggacag |
4972987 |
T |
|
| Q |
101 |
ttgcaaaaagcttttataacaggtactagttcaaatctgtgaatactacaaactagaccttagtcaatgaattatttttatcgttattgtgttgacaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4972988 |
ttgcaaaaagcttttataacaggtactagttcaaatctgtgaatactacaaactagaccttagtcaatgaattatttttatcattattgtgttgacaaca |
4973087 |
T |
|
| Q |
201 |
atgta-nnnnnnncttctgttatgaaatgtaggggttcctaagttgaatagagcagaactagagacagcttgtgaggatttcagcaatattgttaccaat |
299 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4973088 |
atgtattttttttcttctgttatgaaatgtaggggttcctaagttgaatagagcagaactagagacagcttgtgaggatttcagcaatattgttaccaat |
4973187 |
T |
|
| Q |
300 |
gttgaagcatg |
310 |
Q |
| |
|
||||||||||| |
|
|
| T |
4973188 |
gttgaagcatg |
4973198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 4990796 - 4991106
Alignment:
| Q |
1 |
tgtgtttgtgttggtgattctaatcatagttcttctttgcttttggaaaaaaccagcagctaaaataattaaaccttggagtacaggaataagtggacag |
100 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4990796 |
tgtgtttgtgatggtgattctgatcatagttcttctttgcttttggaaaaaaccagcagctaaaataattaaaccttggaatacaggaataagtggacag |
4990895 |
T |
|
| Q |
101 |
ttgcaaaaagcttttataacaggtactagttcaaatctgtgaatactacaaactagaccttagtcaatgaattatttttatcgttattgtgttgacaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4990896 |
ttgcaaaaagcttttataacaggtactagttcaaatctgtgaatactacaaactagaccttagtcaatgaattatttttatcattattgtgttgacaaca |
4990995 |
T |
|
| Q |
201 |
atgta-nnnnnnncttctgttatgaaatgtaggggttcctaagttgaatagagcagaactagagacagcttgtgaggatttcagcaatattgttaccaat |
299 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4990996 |
atgtattttttttcttctgttatgaaatgtaggggttcctaagttgaatagagcagaactagagacagcttgtgaggatttcagcaatattgttaccaat |
4991095 |
T |
|
| Q |
300 |
gttgaagcatg |
310 |
Q |
| |
|
||||||||||| |
|
|
| T |
4991096 |
gttgaagcatg |
4991106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 35833062 - 35833020
Alignment:
| Q |
83 |
acaggaataagtggacagttgcaaaaagcttttataacaggta |
125 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||| ||||||||| |
|
|
| T |
35833062 |
acaggaataagtggacagttgcagaaagcatttgtaacaggta |
35833020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 35832593 - 35832524
Alignment:
| Q |
220 |
tatgaaatgtaggggttcctaagttgaatagagcagaactagagacagcttgtgaggatttcagcaatat |
289 |
Q |
| |
|
||||||||| |||||| || ||||| ||| ||||||| | |||||||| ||||| |||||||||||||| |
|
|
| T |
35832593 |
tatgaaatgcaggggtccccaagttaaatcgagcagagttggagacagcctgtgaagatttcagcaatat |
35832524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University