View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_low_57 (Length: 320)
Name: NF6392_low_57
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 36 - 299
Target Start/End: Complemental strand, 40285413 - 40285150
Alignment:
| Q |
36 |
ccctattgattctcaaacattcttctattccgaactcatcaccaatcatcctcatcctcctaattttgactctgaccctgataatcttgccctaattccc |
135 |
Q |
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|||||||||| | || ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
40285413 |
ccctattgatccacagacattcttctattccgaactcataaccaatcttcctcatcctcctaattttgactctgaccttgataatcttgccctaatcccc |
40285314 |
T |
|
| Q |
136 |
aaatcattccataatgattatcatcaagaacaagaacaagatcatgtttcgcttcttcctacttctaccactagcaagatgctgggacgacgtgaacgca |
235 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |
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| T |
40285313 |
aaatcattccataaagattctcatcaagaacaagaacaagaccatgtttcgcttcttcctccttctaccactagcaagatgctgggacgatgtgaattca |
40285214 |
T |
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| Q |
236 |
ttctaccatcgtctggccaagcaaaaaagcgaagactcacgaaaagcctgacagtaccaccacc |
299 |
Q |
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|||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40285213 |
ttctaccaccgtctggcccagcaaaaaagcgaagactcatgaaaagcctgacagtaccaccacc |
40285150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 40280469 - 40280295
Alignment:
| Q |
1 |
ccatttgaatatacaccattaacaccccctacacgccctattgattctcaaacattcttctattccgaactcatcaccaatcatcctcatcctcctaatt |
100 |
Q |
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||||||||||| || |||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| || ||||| ||||||||||| |
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| T |
40280469 |
ccatttgaatacacgccattaacaccctccacacgccctattgatcctcaaacattcttctattccgaactcatcacttctcttcctcgtcctcctaatt |
40280370 |
T |
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| Q |
101 |
ttgactctgaccctgataatcttgccctaattcccaaat---cattccataatgattatcatcaagaacaagaacaagatc |
178 |
Q |
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| T |
40280369 |
ttgactctaaccctaataatcttgccctaattcccaaattaccattcc------actatcatcaagaacaagaacaagatc |
40280295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 40457881 - 40458055
Alignment:
| Q |
1 |
ccatttgaatatacaccattaacaccccctacacgccctattgattctcaaacattcttctattccgaactcatcaccaatcatcctcatcctcctaatt |
100 |
Q |
| |
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||||||||||| || |||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| || ||||| ||||||||||| |
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| T |
40457881 |
ccatttgaatacacgccattaacaccctccacacgccctattgatcctcaaacattcttctattccgaactcatcacttctcttcctcgtcctcctaatt |
40457980 |
T |
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| Q |
101 |
ttgactctgaccctgataatcttgccctaattcccaaat---cattccataatgattatcatcaagaacaagaacaagatc |
178 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||| |
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| T |
40457981 |
ttgactctaaccctaataatcttgccctaattcccaaattaccattcc------actatcatcaagaacaagaacaagatc |
40458055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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