View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_low_6 (Length: 619)
Name: NF6392_low_6
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 5 - 602
Target Start/End: Original strand, 41737414 - 41738014
Alignment:
| Q |
5 |
caactgagattacttttgaggtaagttaagacataatttttggcatagttctaaattgcaattacggttatgttgtgatccttgttattgtggaaaaatg |
104 |
Q |
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| T |
41737414 |
caactgagattacttttgaggtaagttaagacataatttttggcatagttctaaattgcaattacggttatgttgtgatccttgttattgcggaaaaatg |
41737513 |
T |
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| Q |
105 |
tagcgatacaactagaccgaagaccttggttgatatatgcttgcagactataatttaatatcatttt--gtcacacaatttaagattaataaataagcag |
202 |
Q |
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| T |
41737514 |
tagcgatacaactagaccgaagaccttggttgatatatgcttgcagactataatttaatatcattttttgtcacacaatttaagattaataaataagcag |
41737613 |
T |
|
| Q |
203 |
ttgtaaatttagaagttgatgatctttgtatggtggatgcagaatacagtggttgcgtcaccaggaggacgaggaatgcaagcaggggcactaagggtag |
302 |
Q |
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| T |
41737614 |
ttgtaaatttagaagttgatgatctttgtatggtggatgcagaatacagtggttgcgtcaccaggtggacgaggaatgcaagcagtggcactaagggtag |
41737713 |
T |
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| Q |
303 |
acagtgatagagcaatgttctataaagttaagattaaaggaacacaagacactctcttggacaacacaggaactcattacttctacaagtgtctcatcca |
402 |
Q |
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| T |
41737714 |
acagtgatagagcaatgttctataaagttaagattaaaggaacacaagacactctcttggacaacacaggaactcattacttctacaagtgtctcatcca |
41737813 |
T |
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| Q |
403 |
aggaaaagttgatttcatctttggcaatgcaaaatcactctatgaggtaaagttaaatgatcattttctatg-nnnnnnnnactaaaattacaaaactag |
501 |
Q |
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| T |
41737814 |
aggaaaagttgatttcatctttggcaatgcaaaatcactctatgaggtaaagtaaaatgatcattttctatgtttttttttactaaaattacaaaactag |
41737913 |
T |
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| Q |
502 |
tttcatatttggaacattgaatgattctgtttgtatacttatcagaaatgtaggcttcaatcaatagctgagaactatggagcaattgcagcacatcata |
601 |
Q |
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| T |
41737914 |
tttcatatttggaacattgaatgattcttgttgtatacttatcagaagtgtaggcttcaatcaatagctgagaactatggagcaattgcagcacatcata |
41738013 |
T |
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| Q |
602 |
g |
602 |
Q |
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| T |
41738014 |
g |
41738014 |
T |
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