View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_low_60 (Length: 318)
Name: NF6392_low_60
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 4274597 - 4274310
Alignment:
| Q |
19 |
aatgttacgattgtcatttcaaagatctttaaatttaccgacgaatgttggttcaagtggcaagaaagtttggtgctcctaagtacgatatgaggttgag |
118 |
Q |
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| T |
4274597 |
aatgttacgattgtcatttcaaagatctttaaatttaccgacgaatgttggttcaagtggcaagaaagtttggtgctcctaagtacgatatgaggttgaa |
4274498 |
T |
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| Q |
119 |
tcttgtaaatggaaaaatttatgttattccctttattcttatctactgactcagttcatgtcatacatatagtgttaacgacaaaatattctaacaagtc |
218 |
Q |
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| T |
4274497 |
tcttgtaaatggaaaaatttatgttattccctttattcttatctactgactcagttcatgtcatacatatagtgtaaacgacaaaatattctaataagtc |
4274398 |
T |
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| Q |
219 |
caataa-nnnnnnnncctaaatgttaatccgaatttgtttttcttaaactaaacaatctttaaatttttcctggcgtgttccaatcct |
305 |
Q |
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| T |
4274397 |
caataatttttttttcctaaatgttaatccgaatttgtttttcttaaactaaacaatctttaaatttttccttgcgtgttccaatcct |
4274310 |
T |
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