View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_low_61 (Length: 298)
Name: NF6392_low_61
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_61 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 45 - 298
Target Start/End: Original strand, 42037599 - 42037847
Alignment:
| Q |
45 |
caaggaatctgcatcataaaccaacatcattgcaaagagaaacacctcaaaaagagtaaattaagaaagagnnnnnnnnnntattcactcacgggtttta |
144 |
Q |
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| T |
42037599 |
caaggaatctgcatcataaaccaacatcattgcaaagagaaacacctcaaaaagagtaaattaagaaagaaagaaaa-----aatcactcacgggtttta |
42037693 |
T |
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| Q |
145 |
agagttttgttaactcttgtacttttctcttccaattttcaataatatttctttgtttgccattnnnnnnnntacacatcagtattgataatataataag |
244 |
Q |
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| T |
42037694 |
agagttttgttaactcttgtacttttctcctccaattttcaataatatttctttgtttgccattaaaaaaaatacacatcagtattgataatataataag |
42037793 |
T |
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| Q |
245 |
cataagtatttacaatttcttaaggtgcatcatgttcatactttactatttttt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42037794 |
cataagtatttacaatttcttaaggtgcatcatgttcatactttactatttttt |
42037847 |
T |
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