View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_low_63 (Length: 288)
Name: NF6392_low_63
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_63 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 49423969 - 49423713
Alignment:
| Q |
20 |
tggagaaccgagaaactcacgtcttataggtctaataaattcaaaaaataatggaaatgagaatcaagcttttgaactgtcttaacaagccatttgggga |
119 |
Q |
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| T |
49423969 |
tggagaaccgagaaactcacgtcttataggtctaataaattcaaaaaataatggaa-tgagaatcaagcttttgaactgtcttaacaagccatttgggga |
49423871 |
T |
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| Q |
120 |
agcttgttcagtgttttaattcaattgttcaaccttcattttaaacttaaagatggagatggttgatagattcaactttcaagacattagggataacatt |
219 |
Q |
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| T |
49423870 |
agcttgttcagtgttttaattcaattgttcaaccttcattttaaacttaaagttggagatggttgatagattcaactttcaagacattagggataacatt |
49423771 |
T |
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| Q |
220 |
ttttatgctcgtacaatttcggccattacagatttgcaatatcacgttacaacttcat |
277 |
Q |
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| T |
49423770 |
ttttatgctcgtacaatttcggccattacagatttgcaatatcacgttacaacttcat |
49423713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 277
Target Start/End: Complemental strand, 49426060 - 49425870
Alignment:
| Q |
86 |
agcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcattttaaacttaaagatggagatggttga |
185 |
Q |
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| T |
49426060 |
agcttttgaactgtcttaatgaatcatttggggaaacttgttcagcttttcaattcaatagttcaacctctagtttaaactaaatgtatgagatggttca |
49425961 |
T |
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| Q |
186 |
tagattcaactttcaagacattagggataacattttttatgctcgtacaatttcggccattacagatttgcaatatcacgttacaacttcat |
277 |
Q |
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| T |
49425960 |
tagtttcaactttcaagacattagggatagcatttcttacgctcttaagatttc-gccaattcatattggcaatgtcatgttacaacttcat |
49425870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 75 - 222
Target Start/End: Original strand, 43363148 - 43363293
Alignment:
| Q |
75 |
aatgagaatcaagcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcattttaaacttaaagatg |
174 |
Q |
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| T |
43363148 |
aatgagaaggaagtttttgaattgtcttaatgagtcatttggggaagcttgtttagtgtttcacttcaattgttcaacaaccagtttaaact--atgtag |
43363245 |
T |
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| Q |
175 |
gagatggttgatagattcaactttcaagacattagggataacattttt |
222 |
Q |
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| T |
43363246 |
gagatgattaatagattcaactttcaagacataagggataacattttt |
43363293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 17641030 - 17640992
Alignment:
| Q |
178 |
atggttgatagattcaactttcaagacattagggataac |
216 |
Q |
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| T |
17641030 |
atggttgatagattcaactttcaagaatttagggataac |
17640992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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