View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6392_low_64 (Length: 287)

Name: NF6392_low_64
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6392_low_64
NF6392_low_64
[»] chr3 (2 HSPs)
chr3 (1-97)||(55383461-55383557)
chr3 (95-169)||(19341907-19341979)
[»] chr4 (2 HSPs)
chr4 (102-279)||(53730768-53730944)
chr4 (98-177)||(53731276-53731353)
[»] chr2 (2 HSPs)
chr2 (187-279)||(596765-596859)
chr2 (97-177)||(597190-597268)
[»] chr8 (2 HSPs)
chr8 (97-177)||(26936796-26936874)
chr8 (130-276)||(26937205-26937344)


Alignment Details
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 55383461 - 55383557
Alignment:
Q  1 ccacaagttaacattactgctcgctcactctgcttcccttacttcctctccacccatttctttgcattctctttctattctataaataaataagtaa 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55383461 ccacaagttaacattactgctcgctcactctgcttcccttacttcctctccacccatttctttgcattctctttctattctataaataaataagtaa 55383557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 19341907 - 19341979
Alignment:
Q  95 taagagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacata 169  Q
    ||||||||||||||||||| |||||| |||||||  ||||||||||| |||| ||||||||||||||||||||||    
T  19341907 taagagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcagccaataacattttgccacata 19341979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 102 - 279
Target Start/End: Original strand, 53730768 - 53730944
Alignment:
Q  102 ttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatctttttnnnnnnnnntgttaatttattcaa 201  Q
    |||||||||||| |||||| |||||||  ||||||||||| |||  ||||||||  |||| | |||||||| ||||         |||||||||||||||    
T  53730768 ttaattgtggtgcactgaccgtgtaaa--agaactttacacagttagccaataaattttttcaacataatcctttttaaaaaaaatgttaatttattcaa 53730865  T
Q  202 taaaaggtaaattctgaaggtgtgcctctccacgttcttgtc--agttgtgtcgttactctccccattcttctctctgct 279  Q
    ||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| |||||||||||||||||||    
T  53730866 taaaaggtaaattctgaaggtgtgcctctccacgttcttgtctttgttgtgtcgttactc-ccccattcttctctctgct 53730944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 53731353 - 53731276
Alignment:
Q  98 gagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatcttttt 177  Q
    |||||||||||||||| |||||| |||||||  ||||||||||| ||||  |||||||||||||||||||||||| ||||    
T  53731353 gagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcaaccaataacattttgccacataatcctttt 53731276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 187 - 279
Target Start/End: Original strand, 596765 - 596859
Alignment:
Q  187 tgttaatttattcaataaaaggtaaattctgaaggtgtgcctctccacgttcttgtc--agttgtgtcgttactctccccattcttctctctgct 279  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||||||| |||||| ||||    
T  596765 tgttaatttatacaataaaaggtaaattctgaaggtgtgcctctccacgttcttgtctttgttgtgtcgttactccccccattattctctatgct 596859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 177
Target Start/End: Complemental strand, 597268 - 597190
Alignment:
Q  97 agagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatcttttt 177  Q
    ||||||||||||||||| |||||| |||||||  ||||||||||| |||| | ||||||||||||||||||||||| ||||    
T  597268 agagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcagtcaataacattttgccacataatcctttt 597190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 26936796 - 26936874
Alignment:
Q  97 agagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatcttttt 177  Q
    ||||||||||||||||| |||||| |||||||  ||||||||||| |||| ||||||||||||||||||||||||| ||||    
T  26936796 agagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcagccaataacattttgccacataatcctttt 26936874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 276
Target Start/End: Complemental strand, 26937344 - 26937205
Alignment:
Q  130 aagaactttacatagtcggccaataacattttgccacataatctttttnnnnnnnnntgttaatttattcaataaaaggtaaattctgaaggtgtgcctc 229  Q
    ||||| |||||| |||| |||||||| |||||||||||||||| ||||         |||||||||||||||||||||||||        ||||||||||    
T  26937344 aagaaatttacacagtcagccaataaaattttgccacataatcctttttaaaaaaa-tgttaatttattcaataaaaggtaa--------ggtgtgcctc 26937254  T
Q  230 tccacgttcttgtc--agttgtgtcgttactctccccattcttctctct 276  Q
    ||||||||||||||   ||||||||||||||| ||||||| || |||||    
T  26937253 tccacgttcttgtctttgttgtgtcgttactccccccatttttttctct 26937205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University