View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_low_65 (Length: 287)
Name: NF6392_low_65
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_65 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 287
Target Start/End: Complemental strand, 44358062 - 44357789
Alignment:
| Q |
14 |
atcatggtggaactaactttgggagaacaagctctgcttatatgataacaggctattatgatcaagcaccacttgatgaatatggtaagtgtataacata |
113 |
Q |
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| T |
44358062 |
atcatggtggaactaactttgggagaacaagctctgcttatatgataacaggctattatgatcaagcaccacttgatgaatatggtaagtgtataacata |
44357963 |
T |
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| Q |
114 |
acatcaattttaatttactcattttttaatgataagtgtataatcttagtcattttcctacctcattacatataaaattttaattttgcaaatactattg |
213 |
Q |
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| T |
44357962 |
acatcaattttaatttactcattttttaatgataagtgtataatcttagtcattttcctacctcattacatataaaattttaattttgcaaatactattg |
44357863 |
T |
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| Q |
214 |
ttaggtttattcaggcaacctaagtggggacatctcaaggagttgcattctgcaatcaagtcttgttccaccac |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44357862 |
ttaggtttattcaggcaacctaagtggggacatctcaaggagttgcatgctgcaatcaagtcttgttccaccac |
44357789 |
T |
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