View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_low_69 (Length: 279)
Name: NF6392_low_69
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_69 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 3 - 273
Target Start/End: Complemental strand, 4890815 - 4890545
Alignment:
| Q |
3 |
tttagtctccccatggtannnnnnnggtcctccaccattttttatgacgtggtatcatcattaatgatgtagcagtgatgtggtacaacaactcttcaac |
102 |
Q |
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| T |
4890815 |
tttagtctccccatggtatttttttggtcctccaccattttttatgacgtggtatcatcattaatgatgtagcagtgatgtggtacaacaactcttcaac |
4890716 |
T |
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| Q |
103 |
ctccaccgctccacgtagctcctccgacacccaatcctcgatcttcgtctctcaaagaagcttcgagatctcatggttgttgagcttgagaagcttgatt |
202 |
Q |
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| T |
4890715 |
ctccaccgctccacatagctcctccgacacccaatcctcgatcttcgtctctcaaagaagcttcgagatctcatggttgttgagcttgagaagcttgatt |
4890616 |
T |
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| Q |
203 |
ttgcaaaggcagcaccgtttcaattcaagatcctcaactcagctgtgccacaaattattaatgatgatgtc |
273 |
Q |
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| T |
4890615 |
ttgcaaaggcagcaccgtttcaattcaagatcctcaactcagctgtgccacaaattattaatgatgatgtc |
4890545 |
T |
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 249
Target Start/End: Original strand, 50921339 - 50921450
Alignment:
| Q |
137 |
tcctcgatcttcgtctctcaaagaagcttcgagatctcatggttgttgagcttgagaagcttgattttgcaaaggcagcaccgtttcaattcaagatcct |
236 |
Q |
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|||||||||||| ||||| ||||||||| |||||| |||||||||||||| | ||||| ||||||| |||||| ||||| | |||| || ||||||| |
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| T |
50921339 |
tcctcgatcttcttctctggaagaagctttgagatcccatggttgttgagcctcagaagtttgatttcacaaaggtagcacag-ttcatgtcgagatcct |
50921437 |
T |
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| Q |
237 |
caactcagctgtg |
249 |
Q |
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|||||||| |||| |
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| T |
50921438 |
caactcagttgtg |
50921450 |
T |
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