View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_low_71 (Length: 277)
Name: NF6392_low_71
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_71 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 37080446 - 37080699
Alignment:
| Q |
17 |
aaaggactatctcctttattatccttttgatttatcattttatcaagttcacaaattcgacgactttgttgtagtatgtaatctactacctcatgttttc |
116 |
Q |
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| T |
37080446 |
aaaggagtatctcctttattatccttttgatttatcattttatcaagttcgcaaattcgacgactttgttgtagtatgtaatctactacctcatgttttc |
37080545 |
T |
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| Q |
117 |
catggtatgctgccacatgaagaatattacgcttaaatgaagtgtcaagcatctctgtgggatctggacagtattctaacaacttctctactacttccac |
216 |
Q |
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| T |
37080546 |
cattgtatgctgcaacatgaagaatattacgcttaaatgaagtgtcaagcatctctgtgggatctggacagtattctaacaacttctctactacttccac |
37080645 |
T |
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| Q |
217 |
atggccaccatatgatgctagatgaattgggaaatagccatatttgtccctttg |
270 |
Q |
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| T |
37080646 |
atggccaccatatgatgctagatgaattgggaaatagccatatttgtccctttg |
37080699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 37070613 - 37070866
Alignment:
| Q |
17 |
aaaggactatctcctttattatccttttgatttatcattttatcaagttcacaaattcgacgactttgttgtagtatgtaatctactacctcatgttttc |
116 |
Q |
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| T |
37070613 |
aaaggagtatctcctttcttatccttttgatttatcatcttatgaagttcaggaattcgacgactttgcagcagtatgtgttgtactagctcatgctttc |
37070712 |
T |
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| Q |
117 |
catggtatgctgccacatgaagaatattacgcttaaatgaagtgtcaagcatctctgtgggatctggacagtattctaacaacttctctactacttccac |
216 |
Q |
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| T |
37070713 |
cattttttgctgcaacatgaagaatattacgcttaaatgaagtgtcaagcatctcagtgggatctggacagtattctaacaacttctttaccactttcaa |
37070812 |
T |
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| Q |
217 |
atggccaccatatgatgctagatgaattgggaaatagccatatttgtccctttg |
270 |
Q |
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| T |
37070813 |
gtggcctccatgagatgctagatgaattgagaaatagccatatttgtccctttg |
37070866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 24 - 270
Target Start/End: Complemental strand, 36953814 - 36953574
Alignment:
| Q |
24 |
tatctcctttattatccttttgatttatcattttatcaagttcacaaattcgacgactttgttgtagtatgtaatctactacctcatgttttccatggta |
123 |
Q |
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| T |
36953814 |
tatctcctttattatctttttgatttatcatcttataacgttcactactttgact------ttgtagaatgtattgcaccacctcatattttccatagtt |
36953721 |
T |
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| Q |
124 |
tgctgccacatgaagaatattacgcttaaatgaagtgtcaagcatctctgtgggatctggacagtattctaacaacttctctactacttccacatggcca |
223 |
Q |
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| T |
36953720 |
tgatgcaatgtgaagaatattacgctcatgagaagtgtcaagcatctctgtgggatcaggacaatattccaacaacttcttcactacttccacatggcca |
36953621 |
T |
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| Q |
224 |
ccatatgatgctagatgaattgggaaatagccatatttgtccctttg |
270 |
Q |
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| T |
36953620 |
ccatacgatgctagatgaattgggaaataaccatatttgtccctttg |
36953574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 156 - 270
Target Start/End: Complemental strand, 36947254 - 36947140
Alignment:
| Q |
156 |
aagtgtcaagcatctctgtgggatctggacagtattctaacaacttctctactacttccacatggccaccatatgatgctagatgaattgggaaatagcc |
255 |
Q |
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| T |
36947254 |
aagtgtcgagcatctctctgggatcaggacaatattccaacaacttcttcactacttccacatggccaccataagatgctagatgaattgggaaataacc |
36947155 |
T |
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| Q |
256 |
atatttgtccctttg |
270 |
Q |
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| T |
36947154 |
attattgtccctttg |
36947140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 24 - 270
Target Start/End: Original strand, 12494432 - 12494672
Alignment:
| Q |
24 |
tatctcctttattatccttttgatttatcattttatcaagttcacaaattcgacgactttgttgtagtatgtaatctactacctcatgttttccatggta |
123 |
Q |
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| T |
12494432 |
tatctcctttattatctttttgatttatcatcttatcaagtccaggaatttgact------ttgtagaatgtattgcaccacctcatattttccatattt |
12494525 |
T |
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| Q |
124 |
tgctgccacatgaagaatattacgcttaaatgaagtgtcaagcatctctgtgggatctggacagtattctaacaacttctctactacttccacatggcca |
223 |
Q |
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| T |
12494526 |
tgatgcaacatgaagaatattacgtttatgagaagtgtcaagcatctctgtgggatcaggacaatattctaacaactttttcactacttccacatggcca |
12494625 |
T |
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| Q |
224 |
ccatatgatgctagatgaattgggaaatagccatatttgtccctttg |
270 |
Q |
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| T |
12494626 |
ccatatgatgctacatgaattgggaaataacataatttgtccctttg |
12494672 |
T |
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