View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6392_low_72 (Length: 272)
Name: NF6392_low_72
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_72 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 3480005 - 3479765
Alignment:
| Q |
14 |
gaaggttttaattgttcaatatgctactattctagaactcaaaagcaggagtcaaaatacaagtactatccaaatgttgttgagttagcatccaactgcg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3480005 |
gaaggttttaattgttcaatatgctactattctagaactcaaaagcaggagtcaaaatacaagtactatccaaatgttgttgagttagcatccaactgcg |
3479906 |
T |
|
| Q |
114 |
acatactagttgttgcctgctcacttacagaggaaacccatcacatcatcaaccgggaggtcatcaatgcacttggtccgaaaggtttccttattaacat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3479905 |
acatactagttgttgcctgctcacttacagaggaaacccatcacatcatcaaccgggaggtcatcaatgcacttggtccgaaaggtttccttattaacat |
3479806 |
T |
|
| Q |
214 |
cggccgaggtaagcatgttgatgagccagagctggtctctg |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3479805 |
cggccgaggtaagcatgttgatgagccagagctggtctctg |
3479765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 3519613 - 3519373
Alignment:
| Q |
14 |
gaaggttttaattgttcaatatgctactattctagaactcaaaagcaggagtcaaaatacaagtactatccaaatgttgttgagttagcatccaactgcg |
113 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3519613 |
gaaggttttaattgttcaatatgttactattctagaactcaaaagcaggaaccaaaatacaagtactatccaaatgttgttgagttagcatccaactgcg |
3519514 |
T |
|
| Q |
114 |
acatactagttgttgcctgctcacttacagaggaaacccatcacatcatcaaccgggaggtcatcaatgcacttggtccgaaaggtttccttattaacat |
213 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
3519513 |
acatactagtcgttgcctgctctcttacagatgaaacccatcacatcatcaaccgggaggtcatcaatgcacttggtccgaagggtttcctaattaacat |
3519414 |
T |
|
| Q |
214 |
cggccgaggtaagcatgttgatgagccagagctggtctctg |
254 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3519413 |
cggtcgaggtaagcatgttgatgagccagagctggtctctg |
3519373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 3536797 - 3537037
Alignment:
| Q |
14 |
gaaggttttaattgttcaatatgctactattctagaactcaaaagcaggagtcaaaatacaagtactatccaaatgttgttgagttagcatccaactgcg |
113 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
3536797 |
gaaggttttaattgttcaatatgttactattctagaactcaaaagcaggaaccaaaatacaagtactatccaagccttattgagttagcatccaactgcg |
3536896 |
T |
|
| Q |
114 |
acatactagttgttgcctgctcacttacagaggaaacccatcacatcatcaaccgggaggtcatcaatgcacttggtccgaaaggtttccttattaacat |
213 |
Q |
| |
|
||||||| |||||||||||| | |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| |||| |||||||| |
|
|
| T |
3536897 |
acatactggttgttgcctgccctcttacagaggaaactcatcacatcatcaaccgggaggtcattaatgcacttggtccgaagggtgtcctaattaacat |
3536996 |
T |
|
| Q |
214 |
cggccgaggtaagcatgttgatgagccagagctggtctctg |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3536997 |
tggccgaggtaagcatgttgatgagccagagctcgtctctg |
3537037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 3523161 - 3522921
Alignment:
| Q |
14 |
gaaggttttaattgttcaatatgctactattctagaactcaaaagcaggagtcaaaatacaagtactatccaaatgttgttgagttagcatccaactgcg |
113 |
Q |
| |
|
||||| ||||| ||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||| | |
|
|
| T |
3523161 |
gaaggctttaactgtccaatatcctactattcgagaactcaaaagcaggagtcaaaatacaagtactatccaagtgttgttgagcttgcatccaactgtg |
3523062 |
T |
|
| Q |
114 |
acatactagttgttgcctgctcacttacagaggaaacccatcacatcatcaaccgggaggtcatcaatgcacttggtccgaaaggtttccttattaacat |
213 |
Q |
| |
|
| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| || |||||||| |||||||| |
|
|
| T |
3523061 |
atatactagttgttgcctgcccccttacagaggaaacccatcacatcatcaaccgggaggtcattaacgcactcggtccaaagggtttcctaattaacat |
3522962 |
T |
|
| Q |
214 |
cggccgaggtaagcatgttgatgagccagagctggtctctg |
254 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3522961 |
cggtcgaggtaagcatgttgatgagccagagctggtctctg |
3522921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University