View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_low_80 (Length: 251)
Name: NF6392_low_80
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_80 |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 1938735 - 1938610
Alignment:
| Q |
7 |
tccaagaatatcaagcttttacataaagataatacttctaaatcacgacaatgcttgtaagtatgttgacctggctttgatttgaaccaaaaatttattt |
106 |
Q |
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| T |
1938735 |
tccaagaacatcaagcttttacataaagataatacttctaaatcacgacaatgcttgtaagtatgttgacctggctttgatttgaaccaaaaatttattt |
1938636 |
T |
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| Q |
107 |
attttctttctttaaacatatagtag |
132 |
Q |
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| T |
1938635 |
attttctttctttaaacatatagtag |
1938610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 23752286 - 23752221
Alignment:
| Q |
67 |
gtatgttgacctggctttgatttgaaccaaaaatttatttattttctttctttaaacatatagtag |
132 |
Q |
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| T |
23752286 |
gtatgttggactggctttgatttgaaccaaaaatttatttattttctttctttaaacatatagtag |
23752221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 1938527 - 1938491
Alignment:
| Q |
215 |
gttgttaaatatttgtacttagttggtattttaaacc |
251 |
Q |
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| T |
1938527 |
gttgttaaatatttgtacttagttggtattttaaacc |
1938491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 23752138 - 23752102
Alignment:
| Q |
215 |
gttgttaaatatttgtacttagttggtattttaaacc |
251 |
Q |
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| T |
23752138 |
gttgttacatatttgtacatagttggtattttaaacc |
23752102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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