View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6392_low_81 (Length: 251)

Name: NF6392_low_81
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6392_low_81
NF6392_low_81
[»] chr4 (2 HSPs)
chr4 (71-237)||(5230687-5230855)
chr4 (155-193)||(43061682-43061720)
[»] chr8 (4 HSPs)
chr8 (1-73)||(8056859-8056931)
chr8 (1-73)||(17137272-17137344)
chr8 (2-57)||(443678-443733)
chr8 (157-223)||(11556955-11557021)
[»] chr1 (2 HSPs)
chr1 (1-73)||(11562457-11562529)
chr1 (1-72)||(15103544-15103615)
[»] chr7 (2 HSPs)
chr7 (6-73)||(6936318-6936385)
chr7 (1-72)||(35574984-35575055)
[»] chr5 (4 HSPs)
chr5 (1-72)||(18626220-18626291)
chr5 (1-48)||(9383296-9383344)
chr5 (155-207)||(18542220-18542272)
chr5 (155-207)||(26208015-26208067)
[»] chr3 (3 HSPs)
chr3 (1-56)||(16310987-16311042)
chr3 (1-56)||(18487771-18487826)
chr3 (1-56)||(18491981-18492036)
[»] chr2 (2 HSPs)
chr2 (1-43)||(23059252-23059294)
chr2 (6-58)||(44176721-44176773)
[»] chr6 (1 HSPs)
chr6 (1-56)||(31934910-31934966)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 71 - 237
Target Start/End: Original strand, 5230687 - 5230855
Alignment:
Q  71 aactcatgttcattttattcatcttctat--gccgcaccaatactttggagttcggaccaaaggtgcatcttgtatccgacatgtaacatgtggttacat 168  Q
    |||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  5230687 aactcatgttcattttattcatcttctatatgtcgcaccaatactttggagttcggaccaaaggtgtatcttgtatctgacacgtaacatgtggttacat 5230786  T
Q  169 tcaattagttatattttctcaaatttttaatggtatcgacatgtaagtgttgtgtctggtggctgtgtc 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5230787 tcaattagttatattttctcaaatttttaatggtatcgacatgtaagtgttgtgtccggtggctgtgtc 5230855  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 43061682 - 43061720
Alignment:
Q  155 acatgtggttacattcaattagttatattttctcaaatt 193  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  43061682 acatgttgttacattcaattatttatattttctcaaatt 43061720  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 8056931 - 8056859
Alignment:
Q  1 tttttataaagctagaaattcaaataaaagccaggagaagcctgaaccacatacaaaccaattcaaacaaaac 73  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8056931 ttttgataaagctagaaaatcaaataaaagccaggagaagcctgaaccgcatacaaaccaattcaaacaaaac 8056859  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 17137344 - 17137272
Alignment:
Q  1 tttttataaagctagaaattcaaataaaagccaggagaagcctgaaccacatacaaaccaattcaaacaaaac 73  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17137344 ttttgataaagctagaaaatcaaataaaagccaggagaagcctgaaccgcatacaaaccaattcaaacaaaac 17137272  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 443733 - 443678
Alignment:
Q  2 ttttataaagctagaaattcaaataaaagccaggagaagcctgaaccacatacaaa 57  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||| ||| ||||    
T  443733 ttttataaagctataaattcaaataaaagacaggagaagcctgaaccgcatgcaaa 443678  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 11556955 - 11557021
Alignment:
Q  157 atgtggttacattcaattagttatattttctcaaatttttaatggtatcgacatgtaagtgttgtgt 223  Q
    ||||||||||||||||| | ||| ||||||||||||| |||  ||| || |||||| ||||||||||    
T  11556955 atgtggttacattcaatcacttaaattttctcaaattattacaggtgtctacatgttagtgttgtgt 11557021  T

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Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 11562457 - 11562529
Alignment:
Q  1 tttttataaagctagaaattcaaataaaagccaggagaagcctgaaccacatacaaaccaattcaaacaaaac 73  Q
    |||| |||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  11562457 ttttgataacgctagaaattcaaataaaagtcaggagaagcctgaaccgcatacaaaccaattcaaacaaaac 11562529  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 15103615 - 15103544
Alignment:
Q  1 tttttataaagctagaaattcaaataaaagccaggagaagcctgaaccacatacaaaccaattcaaacaaaa 72  Q
    ||||||||||||||||| |||| ||||||| || |||||||||||||| |||| ||| |||||||| |||||    
T  15103615 tttttataaagctagaagttcacataaaagtcatgagaagcctgaaccgcatataaaacaattcaagcaaaa 15103544  T

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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 6936318 - 6936385
Alignment:
Q  6 ataaagctagaaattcaaataaaagccaggagaagcctgaaccacatacaaaccaattcaaacaaaac 73  Q
    ||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  6936318 ataaagctagaaaatcaaataaaagtcaggagaagcctgaaccgcatacaaaccaattcaaacaaaac 6936385  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 35574984 - 35575055
Alignment:
Q  1 tttttataaagctagaaattcaaataaaagccaggagaagcctgaaccacatacaaaccaattcaaacaaaa 72  Q
    |||||||||||||||||||| ||||||||| ||||||| ||| ||||  |||||||| || ||||| |||||    
T  35574984 tttttataaagctagaaatttaaataaaagtcaggagaggcccgaactgcatacaaaacagttcaagcaaaa 35575055  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 18626220 - 18626291
Alignment:
Q  1 tttttataaagctagaaattcaaataaaagccaggagaagcctgaaccacatacaaaccaattcaaacaaaa 72  Q
    |||||||||||||||||||| ||||||||| | ||||||||||||||| |||||||| |||||||| |||||    
T  18626220 tttttataaagctagaaatttaaataaaagtccggagaagcctgaaccgcatacaaaacaattcaagcaaaa 18626291  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 9383344 - 9383296
Alignment:
Q  1 tttttataaagctagaaattcaa-ataaaagccaggagaagcctgaacc 48  Q
    ||||||||||||||||||||||| ||||||| ||||||| | |||||||    
T  9383344 tttttataaagctagaaattcaatataaaagtcaggagatgtctgaacc 9383296  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 18542220 - 18542272
Alignment:
Q  155 acatgtggttacattcaattagttatattttctcaaatttttaatggtatcga 207  Q
    ||||||| ||||||||||||| || |||||||||||||| ||| |||| ||||    
T  18542220 acatgtgattacattcaattacttgtattttctcaaattattactggtgtcga 18542272  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 26208015 - 26208067
Alignment:
Q  155 acatgtggttacattcaattagttatattttctcaaatttttaatggtatcga 207  Q
    ||||||||||||||||||  | || |||||||||||||| ||||| |||||||    
T  26208015 acatgtggttacattcaaacacttttattttctcaaattattaatagtatcga 26208067  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16311042 - 16310987
Alignment:
Q  1 tttttataaagctagaaattcaaataaaagccaggagaagcctgaaccacatacaa 56  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||    
T  16311042 tttttataaggctagaaattcaaataaaagccaggagaagcttgaaccccatacaa 16310987  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 18487826 - 18487771
Alignment:
Q  1 tttttataaagctagaaattcaaataaaagccaggagaagcctgaaccacatacaa 56  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||    
T  18487826 tttttataaggctagaaattcaaataaaagccaggagaagcttgaaccccatacaa 18487771  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 18492036 - 18491981
Alignment:
Q  1 tttttataaagctagaaattcaaataaaagccaggagaagcctgaaccacatacaa 56  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||    
T  18492036 tttttataaggctagaaattcaaataaaagccaggagaagcttgaaccccatacaa 18491981  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 23059294 - 23059252
Alignment:
Q  1 tttttataaagctagaaattcaaataaaagccaggagaagcct 43  Q
    |||| ||||||||||||||||||||||||| ||||||||||||    
T  23059294 ttttgataaagctagaaattcaaataaaagtcaggagaagcct 23059252  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 44176773 - 44176721
Alignment:
Q  6 ataaagctagaaattcaaataaaagccaggagaagcctgaaccacatacaaac 58  Q
    ||||||||||||||||||  |||||||||| || ||||||||| |||||||||    
T  44176773 ataaagctagaaattcaataaaaagccaggtgatgcctgaacctcatacaaac 44176721  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 31934966 - 31934910
Alignment:
Q  1 tttttataaagctagaaattcaa-ataaaagccaggagaagcctgaaccacatacaa 56  Q
    |||||||||||||| | |||||| ||||||| |||| |||||||||||| |||||||    
T  31934966 tttttataaagctaaacattcaatataaaagtcaggtgaagcctgaacctcatacaa 31934910  T

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