View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_low_82 (Length: 248)
Name: NF6392_low_82
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_82 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 232
Target Start/End: Complemental strand, 37960554 - 37960335
Alignment:
| Q |
13 |
atactgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagagtcatgc |
112 |
Q |
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| T |
37960554 |
ataccgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtatcgaaaagaagataagacatttaaagagtcatgc |
37960455 |
T |
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| Q |
113 |
tttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttat |
212 |
Q |
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| T |
37960454 |
tttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtctgtaactgtggttgctggttcaccgaaattggctgtttat |
37960355 |
T |
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| Q |
213 |
gatacagattttgggtgggg |
232 |
Q |
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| T |
37960354 |
gagacagattttgggtgggg |
37960335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 37954613 - 37954526
Alignment:
| Q |
145 |
atagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggg |
232 |
Q |
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| T |
37954613 |
atagggaaatgtcaaaacctggtaagtctgttaatgtgattgctggttcaccgaatttggctgtttatgagacagattttggatgggg |
37954526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 232
Target Start/End: Original strand, 37907552 - 37907707
Alignment:
| Q |
77 |
tattgaaaagaagataagacattttaagagtcatgctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtcttta |
176 |
Q |
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| T |
37907552 |
tatttaaaagaagataagagattttaagagtgatgctttgttagaagctgaaacgttgatacctgattatatggaattattaaaacctggtaactcattt |
37907651 |
T |
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| Q |
177 |
actgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggg |
232 |
Q |
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| T |
37907652 |
gtagtggttgctgggtcacctaaacttgatgtttgtgagactgattttgggtgggg |
37907707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 37915641 - 37915860
Alignment:
| Q |
13 |
atactgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagagtcatgc |
112 |
Q |
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| T |
37915641 |
atactgtagttgtaaataggggtgagttagttggaaaagatggtattcttgtggcggcaaatgctattgaacggaagataagagatttcaagagtgatgc |
37915740 |
T |
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| Q |
113 |
tttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttat |
212 |
Q |
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| T |
37915741 |
cttgttgggagttgaaacgttgatgcctgattatagggaaataataaaaccaggtaactctgttaaaatggtttctgggtcgcctaaacttgatgtttat |
37915840 |
T |
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| Q |
213 |
gatacagattttgggtgggg |
232 |
Q |
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|| || |||||||||||||| |
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| T |
37915841 |
gagactgattttgggtgggg |
37915860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 3783787 - 3783877
Alignment:
| Q |
17 |
tgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagagt |
107 |
Q |
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| T |
3783787 |
tgtggttgtaaagagggctgagttagttggaacaaatgggattgttgcggctgcaaatggtatcgaaaggaagataagagatttcaagagt |
3783877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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