View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_low_88 (Length: 241)
Name: NF6392_low_88
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_88 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 35796581 - 35796361
Alignment:
| Q |
19 |
gaagaacactcgtaaaccttaacaaaataaataaatttgaagtttgaaattttttacatttcccttgcttttatatgaagaggaatgtaatgatataatt |
118 |
Q |
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| T |
35796581 |
gaagaacactcgtaaaccttaacaaaataaataaatttgaagtttgaaattttttacatttcccttgc--ttatatgaagaggaatgtaatgatataatt |
35796484 |
T |
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| Q |
119 |
aaagggtaaacaagagcttcttnnnnnnngggcaaacaagagtttttaaaaagatattaatttgtatccaattaccgcttaannnnnnnacacatgcatt |
218 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||| |
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| T |
35796483 |
aaagggtaaacaagagcttcttaaaaaaagggcaaacaagagtttttaaaaagatattaatttgtattcaattaccgcgtaatttttttacacatgcatt |
35796384 |
T |
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| Q |
219 |
caatcaaatctcatcataataga |
241 |
Q |
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|||||||||| |||||||||||| |
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| T |
35796383 |
caatcaaatcccatcataataga |
35796361 |
T |
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