View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6392_low_92 (Length: 239)

Name: NF6392_low_92
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6392_low_92
NF6392_low_92
[»] chr3 (2 HSPs)
chr3 (1-226)||(49734727-49734952)
chr3 (121-221)||(36288531-36288631)
[»] chr4 (6 HSPs)
chr4 (125-226)||(51215190-51215291)
chr4 (1-119)||(51215033-51215151)
chr4 (126-213)||(51202137-51202224)
chr4 (123-213)||(51159526-51159616)
chr4 (123-201)||(51148635-51148713)
chr4 (122-201)||(29934422-29934501)
[»] chr1 (3 HSPs)
chr1 (146-214)||(38522888-38522956)
chr1 (146-214)||(38540043-38540111)
chr1 (146-214)||(38562261-38562329)
[»] chr6 (1 HSPs)
chr6 (134-202)||(33789508-33789576)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 49734952 - 49734727
Alignment:
Q  1 atgttcatatattcaaagatctttctttgaccattcattcaggacaggtaacttaaaaaattatatattagcttaatgcattaattctcacaagaactca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||    
T  49734952 atgttcatatattcaaagatctttctttgaccattcattcaggacaggtaacttaaaaaattatgtattaggttaatgctttaattctcacaagaactca 49734853  T
Q  101 ctatcaaacaatccatctattgaaaatcagacagttgctctagtaggtgaaagtggaagtggaaagtcaacagtgatatcattgctgcaaagattttatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49734852 ctatcaaacaatccatctattgaaaatcagacagttgctctagtaggtgaaagtggaagtggaaagtcaacagtgatatcattgctgcaaagattttatg 49734753  T
Q  201 atccagattcaggtcagattaaactg 226  Q
    |||||||||| |||||||||||||||    
T  49734752 atccagattctggtcagattaaactg 49734727  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 36288531 - 36288631
Alignment:
Q  121 tgaaaatcagacagttgctctagtaggtgaaagtggaagtggaaagtcaacagtgatatcattgctgcaaagattttatgatccagattcaggtcagatt 220  Q
    |||||||||||||||||| || ||||| ||||||||||||||||| |||||||| || |||||  |||||||||| ||||| | |||||||||||| |||    
T  36288531 tgaaaatcagacagttgcactggtaggagaaagtggaagtggaaaatcaacagttatctcattattgcaaagattctatgacctagattcaggtcacatt 36288630  T
Q  221 a 221  Q
    |    
T  36288631 a 36288631  T

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Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 51215190 - 51215291
Alignment:
Q  125 aatcagacagttgctctagtaggtgaaagtggaagtggaaagtcaacagtgatatcattgctgcaaagattttatgatccagattcaggtcagattaaac 224  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  51215190 aatcagacagttgctctagtaggtgaaagtggaagtggaaaatcaacagtgatctcattgttgcaaagattttatgatccagattcaggtcagattaaac 51215289  T
Q  225 tg 226  Q
    ||    
T  51215290 tg 51215291  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 51215033 - 51215151
Alignment:
Q  1 atgttcatatattcaaagatctttctttgaccattcattcaggacaggtaacttaaaaa-attatatattagcttaatgcattaattctcacaagaactc 99  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| |||||||||| | ||| |||| ||||||||||||||| ||    
T  51215033 atgttcatatattcaaaaatctttccttgaccattcattcaggacaggtaaattaaaaatattatatattggtttagtgca-taattctcacaagaattc 51215131  T
Q  100 actatcaaacaatccatcta 119  Q
    ||||||||| ||||||||||    
T  51215132 actatcaaaaaatccatcta 51215151  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 51202137 - 51202224
Alignment:
Q  126 atcagacagttgctctagtaggtgaaagtggaagtggaaagtcaacagtgatatcattgctgcaaagattttatgatccagattcagg 213  Q
    ||||||||||||| || || || ||||||||||||||||| ||||||||||| |||||| | ||||||||||||||||||||||||||    
T  51202137 atcagacagttgcacttgttggagaaagtggaagtggaaaatcaacagtgatctcattgatacaaagattttatgatccagattcagg 51202224  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 213
Target Start/End: Original strand, 51159526 - 51159616
Alignment:
Q  123 aaaatcagacagttgctctagtaggtgaaagtggaagtggaaagtcaacagtgatatcattgctgcaaagattttatgatccagattcagg 213  Q
    |||| ||||| ||||| || || || ||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||| || |||||    
T  51159526 aaaaacagaccgttgcactggttggagaaagtggaagtggaaaatcaacagtgatctcattactacaaagattttatgatcctgactcagg 51159616  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 51148635 - 51148713
Alignment:
Q  123 aaaatcagacagttgctctagtaggtgaaagtggaagtggaaagtcaacagtgatatcattgctgcaaagattttatga 201  Q
    |||| ||||||||||| || ||||| ||||||||||||||||| ||||||||||| || || || |||||||| |||||    
T  51148635 aaaaacagacagttgcactcgtaggagaaagtggaagtggaaaatcaacagtgatctcgttactacaaagattctatga 51148713  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 29934501 - 29934422
Alignment:
Q  122 gaaaatcagacagttgctctagtaggtgaaagtggaagtggaaagtcaacagtgatatcattgctgcaaagattttatga 201  Q
    ||||| ||||| ||||| || || || ||||||||||||||||| ||||||||||| || ||  | ||||||||||||||    
T  29934501 gaaaaacagacggttgccctggttggagaaagtggaagtggaaaatcaacagtgatgtccttattacaaagattttatga 29934422  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 38522956 - 38522888
Alignment:
Q  146 ggtgaaagtggaagtggaaagtcaacagtgatatcattgctgcaaagattttatgatccagattcaggt 214  Q
    ||||||||||||||||| || || || |||||  | ||| ||||||||||||||||||| |||||||||    
T  38522956 ggtgaaagtggaagtgggaaatcgactgtgattgctttgttgcaaagattttatgatcctgattcaggt 38522888  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 38540111 - 38540043
Alignment:
Q  146 ggtgaaagtggaagtggaaagtcaacagtgatatcattgctgcaaagattttatgatccagattcaggt 214  Q
    ||||||||||||||||| || || || |||||  | ||| | ||||||||||||||||| |||||||||    
T  38540111 ggtgaaagtggaagtgggaaatcgactgtgattgctttgttacaaagattttatgatcctgattcaggt 38540043  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 38562329 - 38562261
Alignment:
Q  146 ggtgaaagtggaagtggaaagtcaacagtgatatcattgctgcaaagattttatgatccagattcaggt 214  Q
    ||||||||||||||||| || || || |||||  | ||| | ||||||||||||||||| |||||||||    
T  38562329 ggtgaaagtggaagtgggaaatcgactgtgattgctttgttacaaagattttatgatcctgattcaggt 38562261  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 33789576 - 33789508
Alignment:
Q  134 gttgctctagtaggtgaaagtggaagtggaaagtcaacagtgatatcattgctgcaaagattttatgat 202  Q
    ||||| ||||| |||| ||||||||||||||| |||||||  ||| ||||  | |||||||||||||||    
T  33789576 gttgcactagttggtgcaagtggaagtggaaaatcaacagcaatagcattagtacaaagattttatgat 33789508  T

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