View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_low_98 (Length: 237)
Name: NF6392_low_98
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_98 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 30274547 - 30274762
Alignment:
| Q |
1 |
atcagtggagaaatatcctccatacattccaatttccactaggaattgcacatccataataaactgttcaaggaataaagataatggatgagaaattgag |
100 |
Q |
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| T |
30274547 |
atcagtggagaaatatcctccatacattccaatttccactaggaattgcacatccataataaactgttcaaggaataaagataatggatgagaaattgag |
30274646 |
T |
|
| Q |
101 |
aagcatgttgttttcaaaactctctcatagtgaaactcaataataaacagaagggagggaagtggaaaacctgtttggcttcatcagtttgtaagctaac |
200 |
Q |
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| T |
30274647 |
aagcatgttgttttcaaaa--ctctcatagtgaaactcaataataaacagaagggagggaagtggaaaacctgtttggcttcatcagtttgtaagctaac |
30274744 |
T |
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| Q |
201 |
atgctcttctgttgttgc |
218 |
Q |
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|||||||||||||||||| |
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| T |
30274745 |
atgctcttctgttgttgc |
30274762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 46270591 - 46270515
Alignment:
| Q |
142 |
aataaacagaagggagggaagtggaaaacctgtttggcttcatcagtttgtaagctaacatgctcttctgttgttgc |
218 |
Q |
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|||||||| |||| |||||| | |||||||||||||| ||||||||||||||||| ||||||||||||||| |||| |
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| T |
46270591 |
aataaacacaaggtagggaaatcaaaaacctgtttggcctcatcagtttgtaagctcacatgctcttctgttattgc |
46270515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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