View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_low_99 (Length: 236)
Name: NF6392_low_99
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_low_99 |
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Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 1098870 - 1098658
Alignment:
| Q |
19 |
attgagaacaaatggtaatttatgttttcattgaattgatctttagataaattatctaatttagagtaaaatattatacacattatttttgtgttaaccc |
118 |
Q |
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| T |
1098870 |
attgagaacaaatggtaatttatgttttcattgaattgatctttagataaattatataatttagagtaaaatattatacacattatttttgtgttaaccc |
1098771 |
T |
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| Q |
119 |
ttcttaaag------nnnnnnnnnnnctct--gataattcagtgttcgattgagaggtagaaaaaagtctttaatcaataattatttcatcaaggctttg |
210 |
Q |
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| T |
1098770 |
ttcctaaagaaaaaaaaaaaaaaaaactctgagataattcagtgttgggttgagaggtagaaaaaagtctttaaccaataattatttcatcaagactttg |
1098671 |
T |
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| Q |
211 |
atacaataatgtg |
223 |
Q |
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||||||||||||| |
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| T |
1098670 |
atacaataatgtg |
1098658 |
T |
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