View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6393_high_4 (Length: 404)

Name: NF6393_high_4
Description: NF6393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6393_high_4
NF6393_high_4
[»] chr7 (9 HSPs)
chr7 (6-387)||(44071845-44072226)
chr7 (106-272)||(47035561-47035727)
chr7 (89-272)||(47032807-47032990)
chr7 (120-272)||(47039180-47039332)
chr7 (267-384)||(47039427-47039544)
chr7 (267-384)||(47033143-47033260)
chr7 (267-361)||(37367600-37367694)
chr7 (332-387)||(47035381-47035436)
chr7 (11-71)||(47039080-47039140)
[»] chr2 (4 HSPs)
chr2 (143-270)||(34622379-34622506)
chr2 (149-270)||(34614898-34615019)
chr2 (267-373)||(34615539-34615645)
chr2 (267-373)||(34622721-34622827)
[»] chr4 (5 HSPs)
chr4 (209-331)||(26827848-26827970)
chr4 (149-331)||(23423535-23423717)
chr4 (145-331)||(23448035-23448221)
chr4 (145-331)||(23875232-23875418)
chr4 (145-331)||(24298023-24298209)
[»] chr8 (1 HSPs)
chr8 (207-360)||(35961628-35961781)


Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 6 - 387
Target Start/End: Complemental strand, 44072226 - 44071845
Alignment:
Q  6 tttcagtcccaaaattaagatttagggttttcaatttctccaaattcaatccgaaaatgagctccaaaggtgccacaacaaccaccaaaggaggaagagg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44072226 tttcagtcccaaaattaagatttagggttttcaatttctccaaattcaatccgaaaatgagttccaaaggtgccacaacaaccaccaaaggaggaagagg 44072127  T
Q  106 caaaccaaaagcctccaaatctgtttcaagatcttcaaaagccggtcttcaattccccgttggaagaatcgcaagattcctcaaggccggaaaatacgct 205  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44072126 caaaccaaaagcctcgaaatccgtttcaagatcttcaaaagccggtcttcaattccccgttggaagaatcgcaagattcctcaaggccggaaaatacgct 44072027  T
Q  206 gaacgtgtcggcgccggtgctccggtctacctctctgccgtacttgagtatctcgctgctgaggttttggaattggctggtaacgctgccagggacaaca 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44072026 gaacgtgtcggcgccggtgctccggtctacctctctgccgtacttgagtatctcgctgctgaggttttggaattggctggtaacgctgccagggacaaca 44071927  T
Q  306 agaagaatcgaattgttccaaggcatattcagcttgctgtgaggaatgacgaagaactcagcaagcttttgggagctgtaac 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44071926 agaagaatcgaattgttccaaggcatattcagcttgctgtgaggaatgacgaagaactcagcaagcttttgggagctgtaac 44071845  T

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Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 106 - 272
Target Start/End: Complemental strand, 47035727 - 47035561
Alignment:
Q  106 caaaccaaaagcctccaaatctgtttcaagatcttcaaaagccggtcttcaattccccgttggaagaatcgcaagattcctcaaggccggaaaatacgct 205  Q
    ||||||||| ||  ||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47035727 caaaccaaatgctaccaaatcagtttcaagatcttcaaaggccggacttcaattccccgttggaagaatcgcaagattcctcaaggccggaaaatacgct 47035628  T
Q  206 gaacgtgtcggcgccggtgctccggtctacctctctgccgtacttgagtatctcgctgctgaggttt 272  Q
    |||||||| || |||||||||||||| ||||||||||| || |||||||||||||||||||||||||    
T  47035627 gaacgtgttggtgccggtgctccggtatacctctctgcggtccttgagtatctcgctgctgaggttt 47035561  T

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Target: chr7; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 89 - 272
Target Start/End: Original strand, 47032807 - 47032990
Alignment:
Q  89 accaaaggaggaagaggcaaaccaaaagcctccaaatctgtttcaagatcttcaaaagccggtcttcaattccccgttggaagaatcgcaagattcctca 188  Q
    |||||||| ||||||||||||||||| ||  ||||||| ||||| ||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||    
T  47032807 accaaaggtggaagaggcaaaccaaaggctgccaaatcagtttccagatcttcaaaggcaggtcttcaattccccgtcggaagaatcgccagattcctca 47032906  T
Q  189 aggccggaaaatacgctgaacgtgtcggcgccggtgctccggtctacctctctgccgtacttgagtatctcgctgctgaggttt 272  Q
    ||||||| |||||||| |||||||| || ||||| ||||| ||||| ||||| ||||| |||||||||||||||||||||||||    
T  47032907 aggccggtaaatacgccgaacgtgttggtgccggagctcctgtctatctctccgccgtccttgagtatctcgctgctgaggttt 47032990  T

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Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 120 - 272
Target Start/End: Original strand, 47039180 - 47039332
Alignment:
Q  120 ccaaatctgtttcaagatcttcaaaagccggtcttcaattccccgttggaagaatcgcaagattcctcaaggccggaaaatacgctgaacgtgtcggcgc 219  Q
    ||||||| ||||||||||||||||| || ||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||| || ||    
T  47039180 ccaaatcagtttcaagatcttcaaaggcaggtcttcaatttcccgtcggaagaatcgccagattcctcaaggccggtaaatacgccgaacgtgttggtgc 47039279  T
Q  220 cggtgctccggtctacctctctgccgtacttgagtatctcgctgctgaggttt 272  Q
    ||| ||||| |||||||| || ||||| || |||||||| |||||||||||||    
T  47039280 cggagctcctgtctacctttccgccgtcctcgagtatcttgctgctgaggttt 47039332  T

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Target: chr7; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 267 - 384
Target Start/End: Original strand, 47039427 - 47039544
Alignment:
Q  267 aggttttggaattggctggtaacgctgccagggacaacaagaagaatcgaattgttccaaggcatattcagcttgctgtgaggaatgacgaagaactcag 366  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||| || ||||| |||||||| ||||||||||| |||||||| ||||| ||||||||    
T  47039427 aggttttggaattggctgggaacgctgccagagacaacaagaagaaccgtattgtaccaaggcacattcagcttgcagtgaggaacgacgaggaactcag 47039526  T
Q  367 caagcttttgggagctgt 384  Q
    ||||||||||||| ||||    
T  47039527 caagcttttgggaactgt 47039544  T

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Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 267 - 384
Target Start/End: Original strand, 47033143 - 47033260
Alignment:
Q  267 aggttttggaattggctggtaacgctgccagggacaacaagaagaatcgaattgttccaaggcatattcagcttgctgtgaggaatgacgaagaactcag 366  Q
    ||||||||||||||||||| || || || ||||||||||||||||| || ||||| |||||||| |||||||||||||| || || || |||||||||||    
T  47033143 aggttttggaattggctggaaatgccgctagggacaacaagaagaaccgtattgtaccaaggcacattcagcttgctgttagaaacgatgaagaactcag 47033242  T
Q  367 caagcttttgggagctgt 384  Q
    ||||||||| ||| ||||    
T  47033243 caagcttttaggaactgt 47033260  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 361
Target Start/End: Complemental strand, 37367694 - 37367600
Alignment:
Q  267 aggttttggaattggctggtaacgctgccagggacaacaagaagaatcgaattgttccaaggcatattcagcttgctgtgaggaatgacgaagaa 361  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||||   | ||||| ||||||||  |||| || ||||||||||| || ||||||    
T  37367694 aggttttggaattggctggtaatgctgcaagggataacaagaagacaaggattgtaccaaggcaccttcaactcgctgtgaggaacgatgaagaa 37367600  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 387
Target Start/End: Complemental strand, 47035436 - 47035381
Alignment:
Q  332 attcagcttgctgtgaggaatgacgaagaactcagcaagcttttgggagctgtaac 387  Q
    ||||| |||||||| ||||| || |||||||| |||||||||||||||||||||||    
T  47035436 attcaacttgctgttaggaacgatgaagaactaagcaagcttttgggagctgtaac 47035381  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 47039080 - 47039140
Alignment:
Q  11 gtcccaaaattaagatttagggttttcaatttctccaaattcaatccgaaaatgagctcca 71  Q
    |||||||||| ||| |||||| |||||||||||||||||| | ||  ||||||||| ||||    
T  47039080 gtcccaaaatcaagttttaggtttttcaatttctccaaatccgattagaaaatgagttcca 47039140  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 143 - 270
Target Start/End: Original strand, 34622379 - 34622506
Alignment:
Q  143 aaagccggtcttcaattccccgttggaagaatcgcaagattcctcaaggccggaaaatacgctgaacgtgtcggcgccggtgctccggtctacctctctg 242  Q
    ||||| ||||||||||||||||||||  | |||||  | |||||||| ||||||||||||||||||||||| || || |||||||| || |||||| | |    
T  34622379 aaagctggtcttcaattccccgttggccgtatcgctcgtttcctcaaagccggaaaatacgctgaacgtgttggtgctggtgctcctgtttacctcgccg 34622478  T
Q  243 ccgtacttgagtatctcgctgctgaggt 270  Q
    | || ||||| |||||||| ||||||||    
T  34622479 ctgttcttgaatatctcgccgctgaggt 34622506  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 149 - 270
Target Start/End: Original strand, 34614898 - 34615019
Alignment:
Q  149 ggtcttcaattccccgttggaagaatcgcaagattcctcaaggccggaaaatacgctgaacgtgtcggcgccggtgctccggtctacctctctgccgtac 248  Q
    ||||| || |||||||||||  | |||||  | |||||||| ||||||||||||||||||||||| || || |||||||| || |||||  |||| || |    
T  34614898 ggtctccagttccccgttggccgtatcgctcgtttcctcaaagccggaaaatacgctgaacgtgttggtgctggtgctcctgtttacctagctgctgttc 34614997  T
Q  249 ttgagtatctcgctgctgaggt 270  Q
    |||| |||||||||||||||||    
T  34614998 ttgaatatctcgctgctgaggt 34615019  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 373
Target Start/End: Original strand, 34615539 - 34615645
Alignment:
Q  267 aggttttggaattggctggtaacgctgccagggacaacaagaagaatcgaattgttccaaggcatattcagcttgctgtgaggaatgacgaagaactcag 366  Q
    ||||||||||||||||||| || ||||| || |||||||||||||   ||||||| ||||| || |||||  | ||||||||||| || |||||| | ||    
T  34615539 aggttttggaattggctggaaatgctgcaagagacaacaagaagacaagaattgtgccaagacacattcaattggctgtgaggaacgatgaagaattgag 34615638  T
Q  367 caagctt 373  Q
    |||||||    
T  34615639 caagctt 34615645  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 373
Target Start/End: Original strand, 34622721 - 34622827
Alignment:
Q  267 aggttttggaattggctggtaacgctgccagggacaacaagaagaatcgaattgttccaaggcatattcagcttgctgtgaggaatgacgaagaactcag 366  Q
    ||||||||||||||||||| || ||||| || |||||||||||||   ||||||| ||||| || |||||  | ||||||||||| || |||||| | ||    
T  34622721 aggttttggaattggctggaaatgctgcaagagacaacaagaagacaagaattgtgccaagacacattcaattggctgtgaggaacgatgaagaattgag 34622820  T
Q  367 caagctt 373  Q
    |||||||    
T  34622821 caagctt 34622827  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 209 - 331
Target Start/End: Original strand, 26827848 - 26827970
Alignment:
Q  209 cgtgtcggcgccggtgctccggtctacctctctgccgtacttgagtatctcgctgctgaggttttggaattggctggtaacgctgccagggacaacaaga 308  Q
    ||||||||| ||||||||||||| |||||  |||| || ||||| || ||||||||||||||| | |||||||| || ||||||||  | || |||||||    
T  26827848 cgtgtcggcaccggtgctccggtttacctagctgcagttcttgaatacctcgctgctgaggttcttgaattggcaggaaacgctgctcgtgataacaaga 26827947  T
Q  309 agaatcgaattgttccaaggcat 331  Q
    ||||| ||||  |||||||||||    
T  26827948 agaatagaatcattccaaggcat 26827970  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 331
Target Start/End: Complemental strand, 23423717 - 23423535
Alignment:
Q  149 ggtcttcaattccccgttggaagaatcgcaagattcctcaaggccggaaaatacgctgaacgtgtcggcgccggtgctccggtctacctctctgccgtac 248  Q
    ||||||||||| || |||||||||||||  |||| | | |||   |||| ||||||| | ||||| ||| | |||||||| || |||||  | || || |    
T  23423717 ggtcttcaatttccggttggaagaatcggtagatacttgaagaaaggaagatacgctcagcgtgtaggcacaggtgctccagtatacctagcagcagttc 23423618  T
Q  249 ttgagtatctcgctgctgaggttttggaattggctggtaacgctgccagggacaacaagaagaatcgaattgttccaaggcat 331  Q
    |||| |||||||||||||||||| | || |||||||| || || ||  | || |||||||||||| ||||  |||||||||||    
T  23423617 ttgaatatctcgctgctgaggttcttgagttggctggaaatgcagcacgtgataacaagaagaatagaatcattccaaggcat 23423535  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 331
Target Start/End: Complemental strand, 23448221 - 23448035
Alignment:
Q  145 agccggtcttcaattccccgttggaagaatcgcaagattcctcaaggccggaaaatacgctgaacgtgtcggcgccggtgctccggtctacctctctgcc 244  Q
    ||||||||||||||| || || ||||||||||  |||| | | |||   |||| ||||||| | ||||| ||| | |||||||| || |||||  | ||     
T  23448221 agccggtcttcaatttccagtgggaagaatcggtagatacttgaagaaaggaagatacgctcagcgtgtaggcacaggtgctccagtatacctagcagca 23448122  T
Q  245 gtacttgagtatctcgctgctgaggttttggaattggctggtaacgctgccagggacaacaagaagaatcgaattgttccaaggcat 331  Q
    || ||||| |||||||||||||||||| | || |||||||| || || ||  | || |||||||||||| ||||  |||||||||||    
T  23448121 gttcttgaatatctcgctgctgaggttcttgagttggctggaaatgcagcacgtgataacaagaagaatagaatcattccaaggcat 23448035  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 331
Target Start/End: Original strand, 23875232 - 23875418
Alignment:
Q  145 agccggtcttcaattccccgttggaagaatcgcaagattcctcaaggccggaaaatacgctgaacgtgtcggcgccggtgctccggtctacctctctgcc 244  Q
    ||||||||||||||| || || ||||||||||  |||| | | |||   |||| ||||||| | ||||| ||| | |||||||| || |||||  | ||     
T  23875232 agccggtcttcaatttccagtgggaagaatcggtagatacttgaagaaaggaagatacgctcagcgtgtaggcacaggtgctccagtatacctagcagca 23875331  T
Q  245 gtacttgagtatctcgctgctgaggttttggaattggctggtaacgctgccagggacaacaagaagaatcgaattgttccaaggcat 331  Q
    || ||||| |||||||||||||||||| | || |||||||| || || ||  | || |||||||||||| ||||  |||||||||||    
T  23875332 gttcttgaatatctcgctgctgaggttcttgagttggctggaaatgcagcacgtgataacaagaagaatagaatcattccaaggcat 23875418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 331
Target Start/End: Original strand, 24298023 - 24298209
Alignment:
Q  145 agccggtcttcaattccccgttggaagaatcgcaagattcctcaaggccggaaaatacgctgaacgtgtcggcgccggtgctccggtctacctctctgcc 244  Q
    ||||||||||||||| || || ||||||||||  |||| | | |||   |||| ||||||| | ||||||||  | ||||||||||| |||||  | ||     
T  24298023 agccggtcttcaatttccagtgggaagaatcggtagatacttgaagaaaggaagatacgctcagcgtgtcggaacaggtgctccggtatacctagcagca 24298122  T
Q  245 gtacttgagtatctcgctgctgaggttttggaattggctggtaacgctgccagggacaacaagaagaatcgaattgttccaaggcat 331  Q
    || ||||| ||||| |||||||| ||| | || |||||||| || || ||  | || |||||||||||| ||||  |||||||||||    
T  24298123 gttcttgaatatcttgctgctgaagttcttgagttggctggaaatgcagcacgtgataacaagaagaatagaatcattccaaggcat 24298209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 360
Target Start/End: Original strand, 35961628 - 35961781
Alignment:
Q  207 aacgtgtcggcgccggtgctccggtctacctctctgccgtacttgagtatctcgctgctgaggttttggaattggctggtaacgctgccagggacaacaa 306  Q
    ||||||||||| |||||||||| || ||| |  | || || ||||| ||||| |||||||| ||| | |||||||||||||| |||||  | || |||||    
T  35961628 aacgtgtcggcaccggtgctcctgtttacttagccgctgttcttgaatatcttgctgctgaagttcttgaattggctggtaatgctgctcgtgataacaa 35961727  T
Q  307 gaagaatcgaattgttccaaggcatattcagcttgctgtgaggaatgacgaaga 360  Q
    ||||||| | ||| ||||||||||| |   | | |||||||||||||| |||||    
T  35961728 gaagaataggattattccaaggcatgtgttgttggctgtgaggaatgatgaaga 35961781  T

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