View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6393_low_2 (Length: 459)

Name: NF6393_low_2
Description: NF6393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6393_low_2
NF6393_low_2
[»] chr8 (9 HSPs)
chr8 (3-410)||(23745876-23746289)
chr8 (250-432)||(21208566-21208748)
chr8 (250-418)||(14887299-14887467)
chr8 (321-416)||(22835371-22835466)
chr8 (337-432)||(18236943-18237038)
chr8 (337-432)||(18246394-18246489)
chr8 (332-432)||(20748621-20748721)
chr8 (337-432)||(33597564-33597659)
chr8 (343-432)||(12919836-12919925)
[»] scaffold0163 (1 HSPs)
scaffold0163 (3-432)||(19803-20229)
[»] chr3 (8 HSPs)
chr3 (15-432)||(40089318-40089732)
chr3 (15-432)||(2159165-2159579)
chr3 (250-432)||(6426870-6427052)
chr3 (250-432)||(8977409-8977591)
chr3 (250-405)||(16406172-16406327)
chr3 (250-432)||(9541699-9541881)
chr3 (332-418)||(28360381-28360467)
chr3 (335-375)||(25507093-25507133)
[»] scaffold0066 (1 HSPs)
scaffold0066 (10-379)||(1799-2175)
[»] chr1 (1 HSPs)
chr1 (3-432)||(20175248-20175674)
[»] chr5 (12 HSPs)
chr5 (260-450)||(21081392-21081582)
chr5 (3-157)||(21081583-21081737)
chr5 (250-432)||(27416694-27416876)
chr5 (226-432)||(20952400-20952606)
chr5 (250-432)||(18384303-18384485)
chr5 (250-432)||(26197921-26198103)
chr5 (321-432)||(33943954-33944065)
chr5 (250-418)||(19381388-19381556)
chr5 (332-432)||(30450278-30450378)
chr5 (337-432)||(24296248-24296343)
chr5 (332-432)||(24416830-24416930)
chr5 (370-418)||(26040415-26040463)
[»] scaffold0145 (1 HSPs)
scaffold0145 (250-432)||(33497-33679)
[»] chr6 (6 HSPs)
chr6 (250-432)||(24927761-24927943)
chr6 (250-432)||(16902509-16902691)
chr6 (250-432)||(31361382-31361564)
chr6 (250-405)||(18164628-18164783)
chr6 (319-432)||(27746664-27746777)
chr6 (319-375)||(11378009-11378065)
[»] chr4 (5 HSPs)
chr4 (250-418)||(16269619-16269787)
chr4 (250-432)||(6696781-6696963)
chr4 (250-418)||(17155979-17156147)
chr4 (332-432)||(26816491-26816591)
chr4 (332-432)||(54695462-54695562)
[»] chr2 (8 HSPs)
chr2 (226-432)||(27165576-27165782)
chr2 (321-418)||(45018984-45019081)
chr2 (250-432)||(9509360-9509542)
chr2 (250-432)||(18655781-18655963)
chr2 (331-418)||(22103158-22103245)
chr2 (340-375)||(29847521-29847556)
chr2 (340-399)||(29862811-29862870)
chr2 (329-398)||(22906787-22906856)
[»] scaffold0313 (2 HSPs)
scaffold0313 (249-418)||(14119-14288)
scaffold0313 (327-418)||(40-131)
[»] scaffold0611 (1 HSPs)
scaffold0611 (250-418)||(2509-2677)
[»] chr7 (11 HSPs)
chr7 (250-432)||(16137780-16137962)
chr7 (250-432)||(6539040-6539222)
chr7 (250-432)||(26353895-26354077)
chr7 (250-432)||(32102943-32103125)
chr7 (250-432)||(46501677-46501859)
chr7 (250-418)||(9540850-9541018)
chr7 (274-432)||(5387511-5387669)
chr7 (250-432)||(8505612-8505794)
chr7 (250-432)||(44901920-44902102)
chr7 (321-418)||(18663519-18663616)
chr7 (332-432)||(15179736-15179836)
[»] scaffold0254 (1 HSPs)
scaffold0254 (250-432)||(13574-13756)
[»] scaffold0141 (1 HSPs)
scaffold0141 (327-418)||(30523-30614)
[»] scaffold0049 (2 HSPs)
scaffold0049 (327-418)||(84198-84289)
scaffold0049 (319-375)||(19201-19257)
[»] scaffold0059 (1 HSPs)
scaffold0059 (328-432)||(46020-46124)
[»] scaffold0764 (1 HSPs)
scaffold0764 (327-418)||(6489-6580)
[»] scaffold0572 (1 HSPs)
scaffold0572 (327-432)||(19-124)
[»] scaffold0142 (1 HSPs)
scaffold0142 (321-418)||(32516-32613)
[»] scaffold0003 (1 HSPs)
scaffold0003 (250-398)||(153135-153283)
[»] scaffold0028 (1 HSPs)
scaffold0028 (332-432)||(99976-100076)
[»] scaffold0010 (2 HSPs)
scaffold0010 (337-432)||(261085-261180)
scaffold0010 (337-432)||(263388-263483)
[»] scaffold0233 (1 HSPs)
scaffold0233 (332-432)||(6894-6994)
[»] scaffold0021 (1 HSPs)
scaffold0021 (319-375)||(167490-167546)


Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 3 - 410
Target Start/End: Complemental strand, 23746289 - 23745876
Alignment:
Q  3 agatggacatcatcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatcca--cgtccaagc 100  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||  |||||||||    
T  23746289 agatgaacatcattattctagtcatcaacaaacttctgatatatcaaaacaaaaggatgaagacgaaccaaattcatcttctctatccattcgtccaagc 23746190  T
Q  101 tggaaatcagttgttgatcatcctaaagagttaatcatttgtgacactgctgacaaagtaagaacaagatcatcattccaagnnnnnnnn----tggcta 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||  |||             ||| ||    
T  23746189 tggaaatcagttgttgatcatcctaaagagttaatcatttgtgactctgctgataaagtaagaacaagatcatcataacaacacaaatcaaacatggtta 23746090  T
Q  197 tgattttccaaatggagccaaaatccttaaatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaa 296  Q
    ||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| ||||||||||||||||||| ||||||||||||||| |||||| |||||    
T  23746089 tgatttctcaaatagagccaaaatccataaatgaagttatcactaatcaatcatggattgaagccatgacttaagagctttctcaatttgagagaaacaa 23745990  T
Q  297 agtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaac 396  Q
    ||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  23745989 agtctggaattcggtacctgaacctcaagacgaaaccatcattggaacaagatgggtgttcagagatatactagatgaaaatggtaaggttgtcagaaac 23745890  T
Q  397 aaggcaagattagt 410  Q
    |||| |||||||||    
T  23745889 aaggaaagattagt 23745876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 250 - 432
Target Start/End: Complemental strand, 21208748 - 21208566
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  21208748 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 21208649  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  21208648 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 21208566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 250 - 418
Target Start/End: Complemental strand, 14887467 - 14887299
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||||| |||||||  || || |||||||| | ||| || |||||||| ||||| || || ||| |   ||||||||||| |||||||||||||||||    
T  14887467 tggattgaggccatgaaggaggaactttctcagtttgaaagaaacaaagtttggaacttagttccaaataatcaagacaaaagcatcattggaacaagat 14887368  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 418  Q
    ||||||| ||||| || || ||| ||   |||||||||||||||||||| ||||| |||||||||||||    
T  14887367 gggtgtttagaaacaagcttgataaaggaggtaaggttgtcagaaacaaagcaaggttagttgctcaag 14887299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 321 - 416
Target Start/End: Original strand, 22835371 - 22835466
Alignment:
Q  321 tcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctca 416  Q
    ||||| ||||||||||||||| ||||||| ||| ||||||||||| || |||||| | |||||||||||||||||||| ||||| |||||||||||    
T  22835371 tcaaggcaaaaccatcattggtacaagataggttttcagaaataagcttgatgaagaaggtaaggttgtcagaaacaatgcaaggttagttgctca 22835466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 432
Target Start/End: Original strand, 18236943 - 18237038
Alignment:
Q  337 attggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    ||||||||||||||||| || |||||||||||||||||| | || || ||| ||||||| || || ||||||||||| ||||  || |||||||||    
T  18236943 attggaacaagatgggtttttagaaataaactagatgaagaaggaaaagttatcagaaataaagccagattagttgcacaaggctacaatcaacaa 18237038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 432
Target Start/End: Original strand, 18246394 - 18246489
Alignment:
Q  337 attggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    ||||||||||||||||| || |||||||||||||||||| | || || ||| ||||||| || || ||||||||||| ||||  || |||||||||    
T  18246394 attggaacaagatgggtttttagaaataaactagatgaagaaggaaaagttatcagaaataaagccagattagttgcacaaggctacaatcaacaa 18246489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 432
Target Start/End: Original strand, 20748621 - 20748721
Alignment:
Q  332 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 431  Q
    ||||||||||||||||||| || || |||||||||||| ||||| | || || ||| | |||||||| || ||||| || |||||||  || ||||||||    
T  20748621 ccatcattggaacaagatgagtatttagaaataaactaaatgaagaaggaaaagttataagaaacaaagctagattggtagctcaagggtacaatcaaca 20748720  T
Q  432 a 432  Q
    |    
T  20748721 a 20748721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 432
Target Start/End: Complemental strand, 33597659 - 33597564
Alignment:
Q  337 attggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    |||||||| |||||||| |||||||| ||| |||||||| | || || ||| ||||||| || || |||||||| || ||||  ||||||||||||    
T  33597659 attggaaccagatgggttttcagaaacaaattagatgaagaaggaaaagttatcagaaataaagcgagattagtcgcacaagggtataatcaacaa 33597564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 432
Target Start/End: Original strand, 12919836 - 12919925
Alignment:
Q  343 acaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    ||||| ||||| |||||||| ||| |||||||| | || || ||||||||||| || || |||||||| || ||||  ||||||||||||    
T  12919836 acaaggtgggtcttcagaaacaaattagatgaagaaggaaaagttgtcagaaataaagctagattagtagcacaaggctataatcaacaa 12919925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 3 - 432
Target Start/End: Original strand, 19803 - 20229
Alignment:
Q  3 agatggacatcatcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatccacgtccaagctg 102  Q
    ||||| || |||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||    ||  |||   |||||||||    
T  19803 agatgaacctcatcattctagtcatcaacaaacctctgatatatcaaaacaaaaggatgaagatgaaccagattcat----tcattcc---tccaagctg 19895  T
Q  103 gaaatcagttgttgatcatcctaaagagttaatcatttgtgacactgctgacaaagtaagaacaagatcatcattccaagnnnnnnnn----tggctatg 198  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||            ||||||||    
T  19896 gaaatcagttgttgatcatccaaaagaattaatcattggtgacactgctgataaagtaagaacaagatcatcattccaagacaaaacaaacatggctatg 19995  T
Q  199 attttccaaatggagccaaaatccttaaatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaag 298  Q
    ||||  |||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | ||| || |||||||    
T  19996 atttctcaaatggagccaaaatccataaatgaagctatcattgatcaatcatggattgaagccatgactgaagagctttctcagtttgaaagaaacaaag 20095  T
Q  299 tctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaa 398  Q
    |||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||    
T  20096 tctggaatttagtacctgaacctcgagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaagatggtaaagtggtcagaaacaa 20195  T
Q  399 ggcaagattagttgctcaagattataatcaacaa 432  Q
     |||||| |||||||||||| |||||||||||||    
T  20196 agcaagactagttgctcaaggttataatcaacaa 20229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 432
Target Start/End: Complemental strand, 40089732 - 40089318
Alignment:
Q  15 tcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatccacgtccaagctggaaatcagttgt 114  Q
    ||||||||| ||||||||||| |||||| |||||||||| |||  |||||| |||||| ||||||    ||  |||   ||||| |||||||||||||||    
T  40089732 tcattctagacatcaacaaacctctgatgtatcaaaacagaagaatgaagatgaaccaaattcat----tcattcc---tccaaactggaaatcagttgt 40089640  T
Q  115 tgatcatcctaaagagttaatcatttgtgacactgctgacaaagtaagaacaagatcatcattccaagnnnnnnnn----tggctatgattttccaaatg 210  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||            ||||||||||||  ||||||    
T  40089639 tgatcatcctaaagaattaatcattggtgacactgctgataaagtaagaacaagatcatcattccaagacaaaacaaacatggctatgatttctcaaatg 40089540  T
Q  211 gagccaaaatccttaaatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttgg 310  Q
    |||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||| ||| || ||||||||||||||||| |    
T  40089539 gagccaaaatccataaatgaagctatcattgatcaatcatggattgaagccatgactgaagaactttctcaatttgaaagaaacaaagtctggaatttag 40089440  T
Q  311 taccagaacctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagt 410  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| || || |||||||| |||||| ||||    
T  40089439 tacctgaacctcaagacaaaactatcattggaacaagatgggtgttcagaaataaactagatgaagatggtaaagtggtaagaaacaaagcaagactagt 40089340  T
Q  411 tgctcaagattataatcaacaa 432  Q
     ||||||| |||||||||||||    
T  40089339 agctcaaggttataatcaacaa 40089318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 432
Target Start/End: Original strand, 2159165 - 2159579
Alignment:
Q  15 tcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatccacgtccaagctggaaatcagttgt 114  Q
    ||||||||| ||||||||||| |||||| |||||||||| |||  |||||| ||||||  |||||    ||  |||   |||||||||||||||||||||    
T  2159165 tcattctagacatcaacaaacctctgatgtatcaaaacagaagaatgaagatgaaccaagttcat----tcattcc---tccaagctggaaatcagttgt 2159257  T
Q  115 tgatcatcctaaagagttaatcatttgtgacactgctgacaaagtaagaacaagatcatcattccaagnnnnnnnn----tggctatgattttccaaatg 210  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||            |||||||||| |  ||||||    
T  2159258 tgatcatcctaaagaattaatcattggtgacactgctgataaagtaagaacaagatcatcattccaagacaaaacaaacatggctatgatctctcaaatg 2159357  T
Q  211 gagccaaaatccttaaatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttgg 310  Q
    |||||||||||| ||||||||||||||| |||||||| ||||||||||||||||| |||||| |||||||||| ||| || ||||||||||||||||| |    
T  2159358 gagccaaaatccataaatgaagctatcattgatcaatcatggattgaagccatgaatgaagaactttctcaatttgaaagaaacaaagtctggaatttag 2159457  T
Q  311 taccagaacctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagt 410  Q
    |||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||  ||||    
T  2159458 tacctgaaccacgagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaagatggtaaagttgtcagaaacaaagcaaggctagt 2159557  T
Q  411 tgctcaagattataatcaacaa 432  Q
    |||||||| |||||||||||||    
T  2159558 tgctcaaggttataatcaacaa 2159579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 250 - 432
Target Start/End: Original strand, 6426870 - 6427052
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  6426870 tggattgaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 6426969  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    |||| |||||||| || || |||||| | |||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  6426970 gggttttcagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 6427052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 250 - 432
Target Start/End: Original strand, 8977409 - 8977591
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  8977409 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 8977508  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  8977509 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 8977591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 250 - 405
Target Start/End: Original strand, 16406172 - 16406327
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  16406172 tggattgaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 16406271  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaaga 405  Q
    |||| |||||||| || || |||||| | ||||| |||||||||||||| ||||||    
T  16406272 gggttttcagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaga 16406327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 250 - 432
Target Start/End: Original strand, 9541699 - 9541881
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  9541699 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 9541798  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||| | ||||||||||||| ||| || ||||||    
T  9541799 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcacggttagttgctcaaggttacaaccaacaa 9541881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 418
Target Start/End: Complemental strand, 28360467 - 28360381
Alignment:
Q  332 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 418  Q
    ||||||||||||||||||| || || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||    
T  28360467 ccatcattggaacaagatgtgtatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaag 28360381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 25507133 - 25507093
Alignment:
Q  335 tcattggaacaagatgggtgttcagaaataaactagatgaa 375  Q
    ||||||||||||||||||| || ||||| ||||||||||||    
T  25507133 tcattggaacaagatgggtttttagaaacaaactagatgaa 25507093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 379
Target Start/End: Complemental strand, 2175 - 1799
Alignment:
Q  10 catcatcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatcca--cgtccaagctggaaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||  | ||||||||||||||    
T  2175 catcatcattctagtcatcaacaaacttctgatatatcaaaacaaaaggatgaagacgaaccaaattcatcttctctatccattcctccaagctggaaat 2076  T
Q  108 cagttgttgatcatcctaaagagttaatcatttgtgacactgctgacaaagtaagaacaagatcatcattccaag----nnnnnnnntggctatgatttt 203  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||  ||||            ||||| ||||||     
T  2075 cagttgttgatcatcctaaagagttaatcattggtgacactgctgataaagtaagaacaagatcatcataacaagacaaatcaaatatggctttgatttc 1976  T
Q  204 ccaaatggagccaaaatccttaaatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctgg 303  Q
     ||||| |||||||||||| ||||||||| ||||| | |||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||| |||    
T  1975 tcaaatagagccaaaatccataaatgaagttatcattaatcaatcatggattgaagccatgactgaagagctttctcaatttgagagaaacaaagtatgg 1876  T
Q  304 aatttggtaccagaacctcaagacaaaaccatcattggaacaagatgggtgt-tcagaaataaactagatgaaaatg 379  Q
    |||||||||||  ||| ||||||| |||||||||||||||||| ||| |||| ||||||||| ||| ||||||||||    
T  1875 aatttggtacctaaacatcaagacgaaaccatcattggaacaaaatgcgtgtgtcagaaatatactggatgaaaatg 1799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 3 - 432
Target Start/End: Original strand, 20175248 - 20175674
Alignment:
Q  3 agatggacatcatcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatccacgtccaagctg 102  Q
    ||||| || |||||||||||| ||||||||||| ||||||||||||||||||||   |||||| ||| || ||||||     |  |||   |||||||||    
T  20175248 agatgaacctcatcattctagacatcaacaaacatctgatatatcaaaacaaaaaaatgaagatgaaacaaattcata----cattcc---tccaagctg 20175340  T
Q  103 gaaatcagttgttgatcatcctaaagagttaatcatttgtgacactgctgacaaagtaagaacaagatcatcattccaagnnnnnnnn----tggctatg 198  Q
    ||||||||||||||||||||| ||| | ||||||||| ||||||||||||| ||||||||||||||||||||||||||||            ||||||||    
T  20175341 gaaatcagttgttgatcatccaaaaaaattaatcattggtgacactgctgataaagtaagaacaagatcatcattccaagacaaaacaaacatggctatg 20175440  T
Q  199 attttccaaatggagccaaaatccttaaatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaag 298  Q
    || |  |||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||| |||||| |||||||||| ||| || |||||||    
T  20175441 atatctcaaatggagccaaaatccataaatgaagctatcattgatcaatcatggattgaagccatgaatgaagaactttctcaatttgaaagaaacaaag 20175540  T
Q  299 tctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaa 398  Q
    |||||||||| |||||  |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  20175541 tctggaatttagtacctaaaccacgagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaagatggtaaagttgtcagaaacaa 20175640  T
Q  399 ggcaagattagttgctcaagattataatcaacaa 432  Q
     |||||  |||||||||||| |||||||||||||    
T  20175641 agcaaggctagttgctcaaggttataatcaacaa 20175674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 159; Significance: 2e-84; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 260 - 450
Target Start/End: Complemental strand, 21081582 - 21081392
Alignment:
Q  260 ccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagatgggtgttcag 359  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  21081582 ccatgactgaatagctttctcaatttgagaggaacaaagtctggaatttggtatctgaacctcaagacaaaaccatcattggaacaagatgggtgttcag 21081483  T
Q  360 aaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaaaaagtctattttgatgat 450  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  21081482 aaataaactggatgaaaatggtaaggttgtcagaaacaagccaagattagttgctcaaggttataatcaacaagaagtctattttgatgat 21081392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 3 - 157
Target Start/End: Complemental strand, 21081737 - 21081583
Alignment:
Q  3 agatggacatcatcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatccacgtccaagctg 102  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21081737 agatgaacatcatcattctagtcatcaacaaacttctgatatatcaaaacaaaatgttgaagacgaaccagattcatcttctctatccacgtccaagctg 21081638  T
Q  103 gaaatcagttgttgatcatcctaaagagttaatcatttgtgacactgctgacaaa 157  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21081637 gaaattagttgttgatcatcctaaagagttaatcatttgtgacactgctgacaaa 21081583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 250 - 432
Target Start/End: Original strand, 27416694 - 27416876
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||| ||    
T  27416694 tggattgaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaacat 27416793  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    |||| |||||||| ||||| |||||| | |||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  27416794 gggttttcagaaacaaacttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 27416876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 226 - 432
Target Start/End: Original strand, 20952400 - 20952606
Alignment:
Q  226 aatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaag 325  Q
    |||||||| |||| |||| | | |||||||||||||||||  ||||| |||||||| | ||| || || ||||| |||||||| || ||| |   ||||     
T  20952400 aatgaagccatcattgatgactcatggattgaagccatgaaggaagaactttctcagtttgaaagaaataaagtttggaatttagttccaaataatcaaa 20952499  T
Q  326 acaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataa 425  Q
     ||||||||||||||||||||||||||| ||||| || || || |||||| | |||||||||||||||||||| |||||  |||| ||||||| ||| ||    
T  20952500 gcaaaaccatcattggaacaagatgggttttcaggaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggctagtagctcaaggttacaa 20952599  T
Q  426 tcaacaa 432  Q
    |||||||    
T  20952600 tcaacaa 20952606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 250 - 432
Target Start/End: Original strand, 18384303 - 18384485
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  18384303 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 18384402  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  18384403 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 18384485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 250 - 432
Target Start/End: Complemental strand, 26198103 - 26197921
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  26198103 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 26198004  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  26198003 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 26197921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 321 - 432
Target Start/End: Original strand, 33943954 - 33944065
Alignment:
Q  321 tcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagat 420  Q
    |||||| |||||||||||||||||||||||||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| |    
T  33943954 tcaagataaaaccatcattggaacaagatgggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggt 33944053  T
Q  421 tataatcaacaa 432  Q
    || || ||||||    
T  33944054 tacaaccaacaa 33944065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 250 - 418
Target Start/End: Complemental strand, 19381556 - 19381388
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||||| |||||||  ||| | |||||||| | ||| || |||||||| ||||| || || ||| |   ||||| ||||||||||||||| |||||||    
T  19381556 tggattgaggccatgaaagaataactttctcagtttgaaagaaacaaagtttggaacttagttccaaatgatcaaggcaaaaccatcattggtacaagat 19381457  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 418  Q
     ||| |||||||| || || |||||| | ||||||||||| |||||||| ||||| |||||||||||||    
T  19381456 aggttttcagaaacaagcttgatgaagaaggtaaggttgttagaaacaaagcaaggttagttgctcaag 19381388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 432
Target Start/End: Complemental strand, 30450378 - 30450278
Alignment:
Q  332 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 431  Q
    |||||||||||||||||||||| || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||  || ||||||||    
T  30450378 ccatcattggaacaagatgggtatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaagggtacaatcaaca 30450279  T
Q  432 a 432  Q
    |    
T  30450278 a 30450278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 432
Target Start/End: Complemental strand, 24296343 - 24296248
Alignment:
Q  337 attggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    ||||||||||||||||| || |||||||||||||||||| | || || ||| ||||||| || || ||||||||||| ||||  || |||||||||    
T  24296343 attggaacaagatgggtttttagaaataaactagatgaagaaggaaaagttatcagaaataaagccagattagttgcacaaggctacaatcaacaa 24296248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 432
Target Start/End: Original strand, 24416830 - 24416930
Alignment:
Q  332 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 431  Q
    |||||||||||||||||||||| || |||||||||||| ||||| | || || ||  |||||||||| || ||||| || |||||||  || ||||||||    
T  24416830 ccatcattggaacaagatgggtatttagaaataaactaaatgaagaaggaaaagtcatcagaaacaaagctagattggtagctcaagggtacaatcaaca 24416929  T
Q  432 a 432  Q
    |    
T  24416930 a 24416930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 26040463 - 26040415
Alignment:
Q  370 gatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 418  Q
    |||||||||||||| ||   ||||||||||||||||||||| |||||||    
T  26040463 gatgaaaatggtaatgtaaccagaaacaaggcaagattagtagctcaag 26040415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 250 - 432
Target Start/End: Complemental strand, 33679 - 33497
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| || || ||| ||  |||||||||||||||||||||||||||||    
T  33679 tggattgaggccatgaaagaagaactttctcagtttgaaagaaacaaagtttggaacttagttccaaaaaatcaagacaaaaccatcattggaacaagat 33580  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    |||| |||||||| || || |||||| |  ||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  33579 gggttttcagaaacaagcttgatgaagaacgtaaggttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 33497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 250 - 432
Target Start/End: Complemental strand, 24927943 - 24927761
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  24927943 tggattgaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 24927844  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    |||| |||||||| || || |||||| | |||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  24927843 gggttttcagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 24927761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 250 - 432
Target Start/End: Original strand, 16902509 - 16902691
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  16902509 tggattgaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 16902608  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    |||| || ||||| || || |||||| | |||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  16902609 gggtttttagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 16902691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 250 - 432
Target Start/End: Original strand, 31361382 - 31361564
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  31361382 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 31361481  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  31361482 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 31361564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 250 - 405
Target Start/End: Original strand, 18164628 - 18164783
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  18164628 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 18164727  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaaga 405  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||||    
T  18164728 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaga 18164783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 319 - 432
Target Start/End: Complemental strand, 27746777 - 27746664
Alignment:
Q  319 cctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 418  Q
    ||||||||| |||| || ||||||||||||||||| || ||||| |||||||||||| | || ||  || |  ||||||| || |||||||| || ||||    
T  27746777 cctcaagaccaaacaattattggaacaagatgggtttttagaaacaaactagatgaagaaggcaaaattattcgaaacaaagccagattagtggcacaag 27746678  T
Q  419 attataatcaacaa 432  Q
      ||||||||||||    
T  27746677 gatataatcaacaa 27746664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 11378009 - 11378065
Alignment:
Q  319 cctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaa 375  Q
    ||||||||  |||| |||||||||||||||||||| || ||||| |||||| |||||    
T  11378009 cctcaagatcaaacaatcattggaacaagatgggtttttagaaacaaactaaatgaa 11378065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 250 - 418
Target Start/End: Original strand, 16269619 - 16269787
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| || || ||| ||  |||||||||||||||||||||||||||||    
T  16269619 tggattgaggccatgaaagaagaactttctcagtttgaaagaaacaaagtttggaacttagttccaaaaaatcaagacaaaaccatcattggaacaagat 16269718  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 418  Q
    |||| |||||||| || || |||||| |  ||||||||||||||||||| ||||| |||||||||||||    
T  16269719 gggttttcagaaacaagcttgatgaagaacgtaaggttgtcagaaacaaagcaaggttagttgctcaag 16269787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 250 - 432
Target Start/End: Original strand, 6696781 - 6696963
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  6696781 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 6696880  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  6696881 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 6696963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 250 - 418
Target Start/End: Original strand, 17155979 - 17156147
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| || || ||| |   ||||| ||||||||||||||| |||||||    
T  17155979 tggattgaggccatgaaagaagaactttctcagtttgaaagaaacaaagtttggaacttagttccaaatgatcaaggcaaaaccatcattggtacaagat 17156078  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 418  Q
    | || |||| ||| || || |||||| | |||||||||||||||||||| ||||| |||||||||||||    
T  17156079 gagttttcataaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaag 17156147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 432
Target Start/End: Original strand, 26816491 - 26816591
Alignment:
Q  332 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 431  Q
    |||||||||||||||||||||| || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||  || ||||||||    
T  26816491 ccatcattggaacaagatgggtatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaagggtacaatcaaca 26816590  T
Q  432 a 432  Q
    |    
T  26816591 a 26816591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 432
Target Start/End: Complemental strand, 54695562 - 54695462
Alignment:
Q  332 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 431  Q
    |||||||||||||||||||||| || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||  || ||||||||    
T  54695562 ccatcattggaacaagatgggtatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaagggtacaatcaaca 54695463  T
Q  432 a 432  Q
    |    
T  54695462 a 54695462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 226 - 432
Target Start/End: Complemental strand, 27165782 - 27165576
Alignment:
Q  226 aatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaag 325  Q
    |||||||| |||| |||| | | |||||||||||||||||  ||||| |||||||| | ||| || |||||||| |||||||| || ||| |   ||||     
T  27165782 aatgaagccatcattgatgactcatggattgaagccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaatttagttccaaataatcaaa 27165683  T
Q  326 acaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataa 425  Q
     ||||||||||||||||||||||||||| ||||| || || || |||||| | |||||||||||||||||||| |||||  |||| ||||||| ||| ||    
T  27165682 gcaaaaccatcattggaacaagatgggttttcaggaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggctagtagctcaaggttacaa 27165583  T
Q  426 tcaacaa 432  Q
    |||||||    
T  27165582 tcaacaa 27165576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 321 - 418
Target Start/End: Original strand, 45018984 - 45019081
Alignment:
Q  321 tcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 418  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| | |||||||||||||||||||| ||||| |||||||||||||    
T  45018984 tcaagacaaaaccatcattggaacaagatgggttttcagaaacaaacttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaag 45019081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 250 - 432
Target Start/End: Complemental strand, 9509542 - 9509360
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  9509542 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 9509443  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  9509442 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 9509360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 250 - 432
Target Start/End: Original strand, 18655781 - 18655963
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||| ||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  18655781 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacagagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 18655880  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  18655881 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 18655963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 331 - 418
Target Start/End: Original strand, 22103158 - 22103245
Alignment:
Q  331 accatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 418  Q
    |||||||||||||||||||||||||| |||||||| || |||||| |||  || ||||  ||||||||||||||||| ||||||||||    
T  22103158 accatcattggaacaagatgggtgtttagaaataagcttgatgaagatgacaaagttgctagaaacaaggcaagattggttgctcaag 22103245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 375
Target Start/End: Complemental strand, 29847556 - 29847521
Alignment:
Q  340 ggaacaagatgggtgttcagaaataaactagatgaa 375  Q
    ||||||||||||||||||| ||||||||||||||||    
T  29847556 ggaacaagatgggtgttcaaaaataaactagatgaa 29847521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 29862870 - 29862811
Alignment:
Q  340 ggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaag 399  Q
    |||| |||||||||||||||||| |||||||||||| |  |||||||  |||||||||||    
T  29862870 ggaataagatgggtgttcagaaacaaactagatgaagaaagtaaggtgatcagaaacaag 29862811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 22906787 - 22906856
Alignment:
Q  329 aaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaa 398  Q
    ||||||||||| ||||||||||| | || ||||| || || |||||| | ||||||||| ||||||||||    
T  22906787 aaaccatcattagaacaagatggatttttagaaacaagcttgatgaagaaggtaaggttttcagaaacaa 22906856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 249 - 418
Target Start/End: Original strand, 14119 - 14288
Alignment:
Q  249 atggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaaga 348  Q
    |||||||||||||||||  ||||| |||||||||| ||| || |||||||| |||||||| || ||| |   ||||  ||||||||||||||||||||||    
T  14119 atggattgaagccatgaaggaagaactttctcaatttgaaagaaacaaagtttggaatttagttccaaataatcaaagcaaaaccatcattggaacaaga 14218  T
Q  349 tgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 418  Q
    ||||| |||||||| || || |||||| | |||||||||||||||||||| |||||  |||| |||||||    
T  14219 tgggttttcagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggctagtagctcaag 14288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 327 - 418
Target Start/End: Original strand, 40 - 131
Alignment:
Q  327 caaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 418  Q
    ||||||||||||||||||||||||||| |||||||| || || |||||| | |||||||||||||||||||| |||||  |||| |||||||    
T  40 caaaaccatcattggaacaagatgggttttcagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggctagtagctcaag 131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0611 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: scaffold0611
Description:

Target: scaffold0611; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 250 - 418
Target Start/End: Original strand, 2509 - 2677
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| || || ||| ||  |||||||||||||||||||||||||||||    
T  2509 tggattgaggccatgaaagaagaactttctcagtttgaaagaaacaaagtttggaacttagttccaaaaaatcaagacaaaaccatcattggaacaagat 2608  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 418  Q
    |||| |||||||| || || |||||| |   |||||||||||||||||| ||||| |||||||||||||    
T  2609 gggttttcagaaacaagcttgatgaagaatttaaggttgtcagaaacaaagcaaggttagttgctcaag 2677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 250 - 432
Target Start/End: Complemental strand, 16137962 - 16137780
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||||| | |||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  16137962 tggattgaggtcatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 16137863  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    |||| || ||||| || || |||||| | |||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  16137862 gggtttttagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 16137780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 250 - 432
Target Start/End: Original strand, 6539040 - 6539222
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  6539040 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 6539139  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  6539140 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 6539222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 250 - 432
Target Start/End: Complemental strand, 26354077 - 26353895
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  26354077 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 26353978  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  26353977 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 26353895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 250 - 432
Target Start/End: Original strand, 32102943 - 32103125
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  32102943 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 32103042  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  32103043 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 32103125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 250 - 432
Target Start/End: Original strand, 46501677 - 46501859
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  46501677 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 46501776  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  46501777 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 46501859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 250 - 418
Target Start/End: Complemental strand, 9541018 - 9540850
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| |||||  | || ||| |   | |||||||||||||||||||||||||||    
T  9541018 tggattgaggccatgaaggaagaactttctcagtatgaaagaaacaaagtttggaacctagttccaaataattaagacaaaaccatcattggaacaagat 9540919  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 418  Q
    || | |||||||| ||||| |||||| | ||||||||||||| |||||| ||||| |||||||||||||    
T  9540918 ggattttcagaaacaaacttgatgaagaaggtaaggttgtcaaaaacaaagcaaggttagttgctcaag 9540850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 274 - 432
Target Start/End: Complemental strand, 5387669 - 5387511
Alignment:
Q  274 ctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatg 373  Q
    |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| |||||||||||||||||||||||||| || ||||| || || ||||    
T  5387669 ctttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagatgggtttttagaaacaagcttgatg 5387570  T
Q  374 aaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    || | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  5387569 aagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 5387511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 250 - 432
Target Start/End: Original strand, 8505612 - 8505794
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||| ||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  8505612 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacagagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 8505711  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  8505712 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 8505794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 250 - 432
Target Start/End: Original strand, 44901920 - 44902102
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||| ||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  44901920 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacagagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 44902019  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  44902020 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 44902102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 321 - 418
Target Start/End: Original strand, 18663519 - 18663616
Alignment:
Q  321 tcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 418  Q
    ||||| ||||||||||||||||||||||||| | |||| ||| || || |||||| |  ||||||||||||||||||| ||||| || ||||||||||    
T  18663519 tcaaggcaaaaccatcattggaacaagatggtttttcaaaaacaagcttgatgaagaaagtaaggttgtcagaaacaaagcaaggttggttgctcaag 18663616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 432
Target Start/End: Original strand, 15179736 - 15179836
Alignment:
Q  332 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 431  Q
    |||||||||||||||||||||| || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||  || ||||||||    
T  15179736 ccatcattggaacaagatgggtatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaagggtacaatcaaca 15179835  T
Q  432 a 432  Q
    |    
T  15179836 a 15179836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 250 - 432
Target Start/End: Complemental strand, 13756 - 13574
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  13756 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 13657  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  13656 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 13574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 327 - 418
Target Start/End: Original strand, 30523 - 30614
Alignment:
Q  327 caaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 418  Q
    ||||||||||||||||||||||||||| |||||||| || || |||||| | || ||||||||||||||||| ||||| |||||||||||||    
T  30523 caaaaccatcattggaacaagatgggttttcagaaacaagcttgatgaagaaggaaaggttgtcagaaacaaagcaaggttagttgctcaag 30614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 327 - 418
Target Start/End: Complemental strand, 84289 - 84198
Alignment:
Q  327 caaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 418  Q
    ||||||||||||||||||||||||||| |||||||| || || |||||| | || ||||||||||||||||| ||||| |||||||||||||    
T  84289 caaaaccatcattggaacaagatgggttttcagaaacaagcttgatgaagaaggaaaggttgtcagaaacaaagcaaggttagttgctcaag 84198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 19201 - 19257
Alignment:
Q  319 cctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaa 375  Q
    ||||||||  |||| || ||||||||||||||||| || ||||| ||||||||||||    
T  19201 cctcaagatcaaacaattattggaacaagatgggtctttagaaacaaactagatgaa 19257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 328 - 432
Target Start/End: Complemental strand, 46124 - 46020
Alignment:
Q  328 aaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatc 427  Q
    |||||||||||||||||||||||||| |||||||| || || |||||| |||| || ||||||||||| || ||||| ||||||||||||| ||| || |    
T  46124 aaaaccatcattggaacaagatgggttttcagaaacaagcttgatgaagatggcaaagttgtcagaaataaagcaaggttagttgctcaaggttacaacc 46025  T
Q  428 aacaa 432  Q
    |||||    
T  46024 aacaa 46020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0764 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0764
Description:

Target: scaffold0764; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 327 - 418
Target Start/End: Complemental strand, 6580 - 6489
Alignment:
Q  327 caaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 418  Q
    ||||||||||||||||||||||||||| |||||||| || || |||||| | |||||||||||||||||||| |||||  |||| |||||||    
T  6580 caaaaccatcattggaacaagatgggttttcagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggctagtagctcaag 6489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0572 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 327 - 432
Target Start/End: Original strand, 19 - 124
Alignment:
Q  327 caaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataat 426  Q
    ||||||||||||||||||||||||||| ||||  || || || |||||| | |||||||||||||||||||| |||||  |||| ||||||| ||| |||    
T  19 caaaaccatcattggaacaagatgggttttcaagaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggctagtagctcaaggttacaat 118  T
Q  427 caacaa 432  Q
    ||||||    
T  119 caacaa 124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 418
Target Start/End: Complemental strand, 32613 - 32516
Alignment:
Q  321 tcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 418  Q
    ||||| |||||||||||||||||||||||| || |||||||| ||||  |||||| | ||||||||||||||||  || ||||| |||||||||||||    
T  32613 tcaaggcaaaaccatcattggaacaagatgagttttcagaaacaaacatgatgaagaaggtaaggttgtcagaagaaaagcaaggttagttgctcaag 32516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 398
Target Start/End: Original strand, 153135 - 153283
Alignment:
Q  250 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 349  Q
    |||||||| |||||||  ||||| |||||||||| |||  | |||||||| |||||||| ||  || |   ||||  |||||||||||||||||||||||    
T  153135 tggattgaggccatgaaggaagaactttctcaatttgaacgaaacaaagtttggaatttagttacaaataatcaaagcaaaaccatcattggaacaagat 153234  T
Q  350 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaa 398  Q
    |||| || ||||| || || |||||| | ||||||||| ||||||||||    
T  153235 gggttttaagaaacaagcttgatgaagaaggtaaggttatcagaaacaa 153283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 432
Target Start/End: Complemental strand, 100076 - 99976
Alignment:
Q  332 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 431  Q
    |||||||||||||||||||||| || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||  || ||||||||    
T  100076 ccatcattggaacaagatgggtatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaagggtacaatcaaca 99977  T
Q  432 a 432  Q
    |    
T  99976 a 99976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 432
Target Start/End: Original strand, 261085 - 261180
Alignment:
Q  337 attggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    ||||||||||||||||| || |||||||||||||||||| | || || ||| ||||||| || || ||||||||||| ||||  || |||||||||    
T  261085 attggaacaagatgggtttttagaaataaactagatgaagaaggaaaagttatcagaaataaagccagattagttgcacaaggctacaatcaacaa 261180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 432
Target Start/End: Original strand, 263388 - 263483
Alignment:
Q  337 attggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 432  Q
    ||||||||||||||||| || |||||||||||||||||| | || || ||| ||||||| ||  | ||||||||||| ||||  || |||||||||    
T  263388 attggaacaagatgggtttttagaaataaactagatgaagaaggaaaagttatcagaaataaaaccagattagttgcacaaggctacaatcaacaa 263483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 432
Target Start/End: Original strand, 6894 - 6994
Alignment:
Q  332 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 431  Q
    |||||||||||||||||||| | || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||  || ||||||||    
T  6894 ccatcattggaacaagatggatatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaagggtacaatcaaca 6993  T
Q  432 a 432  Q
    |    
T  6994 a 6994  T

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Target: scaffold0021 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 167490 - 167546
Alignment:
Q  319 cctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaa 375  Q
    ||||||||  |||| |||||||||||||||||||| || ||||| ||||||||||||    
T  167490 cctcaagatcaaacaatcattggaacaagatgggtttttagaaacaaactagatgaa 167546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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