View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6393_low_4 (Length: 422)

Name: NF6393_low_4
Description: NF6393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6393_low_4
NF6393_low_4
[»] scaffold0001 (4 HSPs)
scaffold0001 (154-422)||(94758-95028)
scaffold0001 (1-96)||(95086-95181)
scaffold0001 (154-422)||(122929-123199)
scaffold0001 (2-91)||(122776-122865)
[»] scaffold0023 (6 HSPs)
scaffold0023 (154-419)||(7269-7536)
scaffold0023 (2-96)||(7595-7689)
scaffold0023 (165-331)||(68006-68172)
scaffold0023 (165-331)||(77184-77350)
scaffold0023 (2-93)||(68245-68336)
scaffold0023 (2-93)||(77423-77514)
[»] scaffold0046 (2 HSPs)
scaffold0046 (154-422)||(56606-56875)
scaffold0046 (2-96)||(56934-57028)
[»] chr1 (8 HSPs)
chr1 (156-422)||(22690381-22690649)
chr1 (154-422)||(21297711-21297974)
chr1 (2-96)||(21298033-21298127)
chr1 (154-422)||(22800937-22801207)
chr1 (154-422)||(41376542-41376812)
chr1 (2-96)||(22690226-22690320)
chr1 (2-86)||(41376389-41376473)
chr1 (2-93)||(22800785-22800876)
[»] scaffold1900 (2 HSPs)
scaffold1900 (154-422)||(564-834)
scaffold1900 (25-96)||(434-505)
[»] scaffold0107 (5 HSPs)
scaffold0107 (156-416)||(16174-16436)
scaffold0107 (156-416)||(22786-23048)
scaffold0107 (156-422)||(7912-8180)
scaffold0107 (2-95)||(8242-8335)
scaffold0107 (2-96)||(23109-23203)
[»] chr3 (13 HSPs)
chr3 (154-422)||(12028549-12028819)
chr3 (154-422)||(13032897-13033167)
chr3 (154-395)||(7361590-7361833)
chr3 (154-395)||(14689587-14689830)
chr3 (154-422)||(10156687-10156957)
chr3 (4-96)||(12028398-12028490)
chr3 (154-422)||(10785935-10786204)
chr3 (4-96)||(13033226-13033318)
chr3 (2-86)||(14689434-14689518)
chr3 (2-93)||(10157019-10157110)
chr3 (2-86)||(7361437-7361521)
chr3 (2-86)||(10786273-10786357)
chr3 (2-80)||(138510-138588)
[»] chr2 (10 HSPs)
chr2 (154-422)||(24920267-24920537)
chr2 (157-395)||(23622606-23622846)
chr2 (156-422)||(23197001-23197269)
chr2 (154-422)||(23810153-23810423)
chr2 (2-93)||(24920599-24920690)
chr2 (171-422)||(22642083-22642336)
chr2 (2-93)||(22642415-22642506)
chr2 (2-86)||(23196846-23196930)
chr2 (2-73)||(23622450-23622521)
chr2 (2-80)||(23810000-23810078)
[»] chr4 (8 HSPs)
chr4 (154-422)||(14743122-14743392)
chr4 (183-422)||(13285550-13285791)
chr4 (257-422)||(15150154-15150321)
chr4 (2-93)||(14563233-14563324)
chr4 (2-91)||(14742969-14743058)
chr4 (2-73)||(13285368-13285439)
chr4 (171-250)||(14563403-14563482)
chr4 (155-213)||(4637602-4637660)
[»] scaffold0108 (2 HSPs)
scaffold0108 (171-422)||(35985-36238)
scaffold0108 (2-93)||(36317-36408)
[»] scaffold0026 (2 HSPs)
scaffold0026 (154-422)||(135199-135469)
scaffold0026 (1-93)||(128645-128737)
[»] scaffold0064 (2 HSPs)
scaffold0064 (171-422)||(33817-34070)
scaffold0064 (2-93)||(33647-33738)
[»] scaffold0304 (2 HSPs)
scaffold0304 (171-422)||(19197-19450)
scaffold0304 (2-93)||(19027-19118)
[»] scaffold0040 (2 HSPs)
scaffold0040 (165-422)||(34745-35004)
scaffold0040 (2-93)||(35077-35168)
[»] chr7 (4 HSPs)
chr7 (154-395)||(14338801-14339044)
chr7 (180-395)||(18167803-18168020)
chr7 (2-93)||(18167624-18167715)
chr7 (154-322)||(14163328-14163496)
[»] scaffold0013 (6 HSPs)
scaffold0013 (165-409)||(113247-113493)
scaffold0013 (165-409)||(152563-152809)
scaffold0013 (236-339)||(109078-109181)
scaffold0013 (2-96)||(109272-109366)
scaffold0013 (25-96)||(152879-152950)
scaffold0013 (2-96)||(113563-113656)
[»] scaffold0239 (2 HSPs)
scaffold0239 (154-312)||(25857-26015)
scaffold0239 (4-96)||(25706-25798)
[»] chr8 (5 HSPs)
chr8 (155-422)||(22339739-22340008)
chr8 (154-395)||(1728778-1729021)
chr8 (2-93)||(22339585-22339676)
chr8 (2-86)||(1729090-1729174)
chr8 (154-213)||(22461028-22461087)
[»] scaffold0022 (2 HSPs)
scaffold0022 (156-416)||(27387-27649)
scaffold0022 (2-93)||(27713-27804)
[»] chr6 (2 HSPs)
chr6 (154-422)||(19031324-19031594)
chr6 (2-93)||(19031171-19031262)
[»] scaffold0897 (2 HSPs)
scaffold0897 (154-331)||(442-619)
scaffold0897 (2-93)||(288-379)
[»] scaffold0016 (2 HSPs)
scaffold0016 (180-422)||(128714-128958)
scaffold0016 (2-93)||(128535-128626)
[»] scaffold0303 (1 HSPs)
scaffold0303 (174-331)||(14436-14593)
[»] scaffold0051 (2 HSPs)
scaffold0051 (156-395)||(73232-73473)
scaffold0051 (2-68)||(73550-73616)
[»] scaffold0241 (2 HSPs)
scaffold0241 (226-422)||(15222-15420)
scaffold0241 (2-93)||(18813-18904)
[»] chr5 (1 HSPs)
chr5 (2-78)||(21514679-21514755)
[»] scaffold0100 (2 HSPs)
scaffold0100 (154-410)||(2727-2985)
scaffold0100 (2-71)||(3069-3138)


Alignment Details
Target: scaffold0001 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 154 - 422
Target Start/End: Complemental strand, 95028 - 94758
Alignment:
Q  154 ctgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaa 253  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  95028 ctgcttcgacttgaccgtttgcttgtgcatagcatggtgtcgaagtcagcaatttgaaacctgcgtcttcggcaaattttgtcatttttcgaccagtaaa 94929  T
Q  254 cacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttc 353  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||    
T  94928 cacggatccttggtctgtggtaatggtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcttcctgggtgacctctttc 94829  T
Q  354 aaaggtatttcttc--tccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    ||||| |||   ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  94828 aaagggattggctctatccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 94758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 95181 - 95086
Alignment:
Q  1 tcatcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttcatgc 96  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  95181 tcatcatgaccaaatgtcaacctgaatggtgtggtgttcgtcgattcttttggagatgttcgacatgcccacagagcttcacctaaaacttcatgc 95086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 422
Target Start/End: Original strand, 122929 - 123199
Alignment:
Q  154 ctgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaa 253  Q
    ||||||| || ||||| |||||||||||||| ||||| ||||| || |||||||| |||| |    |||||||||| |||| ||| ||||||||| | |     
T  122929 ctgcttcaacctgaccatttgcttgtgcataatatggtgtcgaggttagcaatttaaaacctatatcttcggcaaactttgccatctttcgaccaatgag 123028  T
Q  254 cacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttc 353  Q
     ||||| || ||||||||||| || |||||||||||||||||||| || || ||| | || | ||||||| ||||||| || ||||  || || |||||     
T  123029 tacggacccctggtctgtggttatggtttctggaataccaaacctgtagatgatgaacttctcgatgaaacttataacttcctcttgagtaacatctttt 123128  T
Q  354 aaaggtatttcttc--tccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    || || ||| | ||  ||||||| || ||||||||||| |||||||| |||||| |||| ||||| |||||    
T  123129 aagggaattgcctctatccattttgtaaaataatctattcctaccaagatgtatctatatcctttcgatga 123199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 122776 - 122865
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaactt 91  Q
    |||||||||||||||| | ||| || ||||||||||| |||||||||||||||||||||||||||||||| | |||||| ||||||||||    
T  122776 catcatgaccaaatgtcagcctaaaaggtgtggtgtttgtcgattctttgggagatgttcgacatgcccagaaagcttcgcctaaaactt 122865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 154 - 419
Target Start/End: Complemental strand, 7536 - 7269
Alignment:
Q  154 ctgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaa 253  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |  | ||||||||||||||  ||||||||||||||||||    
T  7536 ctgcttcgacttgaccgtttgcttgtgcatagtatggtgtcgaagttagcaatttgaaacctatgtcttcggcaaattttaccatttttcgaccagtaaa 7437  T
Q  254 cacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttc 353  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| | |||||||||||||    
T  7436 cacggatccttggtctgtggtaatggtttctggaataccaaatctataaataatggatttttggatgaaacttataacttcatcctgggtgacctctttc 7337  T
Q  354 aaaggtatttcttc--tccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttga 419  Q
    ||||| ||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7336 aaagggatttcctcaatccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttga 7269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 7689 - 7595
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttcatgc 96  Q
    |||||||||| ||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7689 catcatgaccgaatgtcaacctaaatggtgtggtctttgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttcatgc 7595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 165 - 331
Target Start/End: Complemental strand, 68172 - 68006
Alignment:
Q  165 tgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaacacggatcctt 264  Q
    ||||| |||||||||||||| ||||| || || || |||||||| |||| |    |||||| ||| |||| ||| ||||||||||| ||||||||||| |    
T  68172 tgaccatttgcttgtgcataatatggtgttgaggttagcaatttaaaacctatatcttcggaaaactttgccatctttcgaccagtgaacacggatccct 68073  T
Q  265 ggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataac 331  Q
    |||||||||| || |||||||||||| |||||||||| |||||| | || ||||||||| |||||||    
T  68072 ggtctgtggttatggtttctggaatatcaaacctatagataatgaacttctggatgaaacttataac 68006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 165 - 331
Target Start/End: Complemental strand, 77350 - 77184
Alignment:
Q  165 tgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaacacggatcctt 264  Q
    ||||| |||||||||||||| ||||| || || || |||||||| |||| |    |||||| ||| |||| ||| ||||||||||| ||||||||||| |    
T  77350 tgaccatttgcttgtgcataatatggtgttgaggttagcaatttaaaacctatatcttcggaaaactttgccatctttcgaccagtgaacacggatccct 77251  T
Q  265 ggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataac 331  Q
    |||||||||| || |||||||||||| |||||||||| |||||| | || ||||||||| |||||||    
T  77250 ggtctgtggttatggtttctggaatatcaaacctatagataatgaacttctggatgaaacttataac 77184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 68336 - 68245
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttca 93  Q
    |||||||||||||||| | ||| || ||||||||||| |||||||||||||||||||||||||||||||||| |||||| || |||||||||    
T  68336 catcatgaccaaatgtcagcctaaaaggtgtggtgtttgtcgattctttgggagatgttcgacatgcccacaaagcttcgcccaaaacttca 68245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 77514 - 77423
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttca 93  Q
    |||||||||||||||| | ||| || ||||||||||| |||||||||||||||||||||||||||||||||| |||||| || |||||||||    
T  77514 catcatgaccaaatgtcagcctaaaaggtgtggtgtttgtcgattctttgggagatgttcgacatgcccacaaagcttcgcccaaaacttca 77423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 154 - 422
Target Start/End: Complemental strand, 56875 - 56606
Alignment:
Q  154 ctgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaa 253  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||| || | |||||| |||||||| |||||||||| |||||||    
T  56875 ctgcttcgacttgactgtttgcttgtgcatagtatggtgtcgaagttagcaatttgaaacctgtgtcttcggaaaattttgccatttttcgatcagtaaa 56776  T
Q  254 cacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttc 353  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||    
T  56775 cacggatccttggtctgtggtaatggtttctggaataccgaacctataaataatgga-ttttggatgaaatttataacctcatcctgggtgacctctttc 56677  T
Q  354 aaaggtatttcttc--tccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    ||||| ||| | ||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  56676 aaagggattgcctctatccatttcgtgaaataatctatccctaccaaaatgtatttataaccttttgatga 56606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 57028 - 56934
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttcatgc 96  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  57028 catcatgaccaaatgtcaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttcatgc 56934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 182; Significance: 3e-98; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 156 - 422
Target Start/End: Original strand, 22690381 - 22690649
Alignment:
Q  156 gcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaaca 255  Q
    |||||||||| ||| |||||||||||||||||||| |||||||| ||||||||||||| || | ||||||||||||||  ||||||||||||||||||||    
T  22690381 gcttcgacttaaccatttgcttgtgcatagtatggtgtcgaagttagcaatttgaaacctgtgtcttcggcaaattttaccatttttcgaccagtaaaca 22690480  T
Q  256 cggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttcaa 355  Q
    | |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| | |||||||||||||||    
T  22690481 cagatccttggtctgtagtaatggtttctggaataccaaacctataaataatggatttttgaatgaaatttataacttcatcctgggtgacctctttcaa 22690580  T
Q  356 aggtatttcttc--tccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    ||| ||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  22690581 aggcattgcttctatccatttcgtgaaataatctatccctaccaaaatgtatttataccctttagatga 22690649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 154 - 422
Target Start/End: Complemental strand, 21297974 - 21297711
Alignment:
Q  154 ctgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaa 253  Q
    |||||||||||||||| ||||||| |||||||||||| |||||||| ||||||||||||| || | |||||||||| |||  ||||||||||||||||||    
T  21297974 ctgcttcgacttgaccatttgcttatgcatagtatggtgtcgaagttagcaatttgaaacctgtgtcttcggcaaactttaccatttttcgaccagtaaa 21297875  T
Q  254 cacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttc 353  Q
     || ||||||||||||||  |||| ||||||||||||||||| || ||        |||||| ||||||||||||||| ||||| | |||||||||||||    
T  21297874 tacagatccttggtctgtactaatggtttctggaataccaaa-cttta------ccattttttgatgaaatttataacttcatcctcggtgacctctttc 21297782  T
Q  354 aaaggtatttcttc--tccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    ||||| ||| ||||  |||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||    
T  21297781 aaagggattgcttctatccatttcatgaaataatctatccctactaaaatgtatttgtacccttttgatga 21297711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 21298127 - 21298033
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttcatgc 96  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21298127 catcatgaccaaatgtcaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacccaaaacttcatgc 21298033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 154 - 422
Target Start/End: Original strand, 22800937 - 22801207
Alignment:
Q  154 ctgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaa 253  Q
    ||||||| || ||||| |||||||||| ||| ||||| || ||||| | |||||| |||| |    |||||||||| |||| ||| || |||||||| ||    
T  22800937 ctgcttcaacctgaccatttgcttgtggataatatggtgttgaagttatcaatttaaaacctatatcttcggcaaactttgccatcttccgaccagtgaa 22801036  T
Q  254 cacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttc 353  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||| |||||| | || ||||||||| ||||||| || ||||  || || ||||||    
T  22801037 cacggatccttggtctgtggttatggtttctggaataccaaacctatagataatgaacttctggatgaaacttataacttcctcttgagtaacatctttc 22801136  T
Q  354 aaaggtatttcttc--tccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    || || ||| | ||  ||||||| || ||||||||||| |||||||| |||||| |||| ||||| |||||    
T  22801137 aaggggattgcctctatccattttgtaaaataatctattcctaccaagatgtatctatatcctttcgatga 22801207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 154 - 422
Target Start/End: Original strand, 41376542 - 41376812
Alignment:
Q  154 ctgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaa 253  Q
    ||||||| |||||||| ||||| ||||| |||||||| |||||||| |||||||| || | ||   |||||||||||||   ||||||||||||||| ||    
T  41376542 ctgcttcaacttgaccatttgcctgtgcgtagtatggtgtcgaagttagcaatttaaagcctgtatcttcggcaaatttcaccatttttcgaccagtgaa 41376641  T
Q  254 cacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttc 353  Q
     |  ||||||||||||||||| || ||||||||||||||||||||||| || ||| | |||||||| ||  ||||||| || ||||  || || |||||     
T  41376642 tattgatccttggtctgtggttatggtttctggaataccaaacctatagatgatgaacttttggataaagcttataacttcctcttgagtaacatctttt 41376741  T
Q  354 aaaggtatttcttc--tccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    || || ||| ||||  ||||||| || ||||||||||||||||| || || ||||| || ||||| |||||    
T  41376742 aagggaattgcttctatccattttgtaaaataatctatccctactaagatatatttgtatcctttcgatga 41376812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 22690226 - 22690320
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttcatgc 96  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||    
T  22690226 catcatgaccaaatgttaacctgaatggcgtggtgttcgtcgattctatgggagatgttcgacatgcccatagggcttcacctaaaacttcatgc 22690320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 41376389 - 41376473
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaa 86  Q
    |||||||| ||||||| |||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| | |||||| |||||    
T  41376389 catcatgatcaaatgtcaacctgaaaggtgtagtgtttgtcgattctttgggagacgttcgacatgcccataaagcttcgcctaa 41376473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 22800785 - 22800876
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttca 93  Q
    ||||||| |||||| | | ||| || |||||||| || ||||||||||||||||| |||||||||||| ||| |||||| ||||||||||||    
T  22800785 catcatggccaaatatcagcctaaaaggtgtggtatttgtcgattctttgggagacgttcgacatgcctacaaagcttcgcctaaaacttca 22800876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1900 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: scaffold1900
Description:

Target: scaffold1900; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 154 - 422
Target Start/End: Original strand, 564 - 834
Alignment:
Q  154 ctgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaa 253  Q
    ||||||||||||||||||| ||||||||||| ||| | |||||||||||||||||||| | |  | ||||||||||||||| ||| ||||||||||||||    
T  564 ctgcttcgacttgaccgttcgcttgtgcataatattgtgtcgaagtcagcaatttgaatcctatgtcttcggcaaattttgccatctttcgaccagtaaa 663  T
Q  254 cacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttc 353  Q
    ||| |||||||||||||||||||| |||| |||||||||||| ||||| ||||| ||||||||||||||| ||||||| |||||||  ||||| ||||||    
T  664 cacagatccttggtctgtggtaatggtttatggaataccaaatctatagataatagatttttggatgaaacttataacttcatcttgagtgacatctttc 763  T
Q  354 aaaggtatttcttc--tccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    ||||| ||| | ||  ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  764 aaaggaattgcctctatccattttgtgaaatagtctatccctaccaaaatgtatttatacccttttgatga 834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1900; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 434 - 505
Alignment:
Q  25 aatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttcatgc 96  Q
    ||||||||||| || ||  |||| |||||||||||||||||||||||||||| ||| |||||||||||||||    
T  434 aatggtgtggtatttgtttattccttgggagatgttcgacatgcccacagagattcgcctaaaacttcatgc 505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 136; Significance: 8e-71; HSPs: 5)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 156 - 416
Target Start/End: Complemental strand, 16436 - 16174
Alignment:
Q  156 gcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaaca 255  Q
    ||||||||||||||||| ||||||||||| ||||| |  ||||||||||||||||| | |  | ||| |||||||||||  || ||||||||||||||||    
T  16436 gcttcgacttgaccgttcgcttgtgcataatatggtgctgaagtcagcaatttgaatcctatgtctttggcaaattttgctatctttcgaccagtaaaca 16337  T
Q  256 cggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttcaa 355  Q
      |||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||| ||||||| ||||||| |||||| ||||||||    
T  16336 tagatccttggtctgtggtaatggtttctggaataccaaatctatagataatagatttttggatgaaacttataacttcatcttgggtgacatctttcaa 16237  T
Q  356 aggtatttcttc--tccatttcgtgaaataatctatccctaccaaaatgtatttatacccttt 416  Q
    ||| ||| ||||  ||||||| |||||||| ||||| ||||||||||||||||||||||||||    
T  16236 aggaattgcttctatccattttgtgaaatagtctatgcctaccaaaatgtatttatacccttt 16174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 156 - 416
Target Start/End: Complemental strand, 23048 - 22786
Alignment:
Q  156 gcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaaca 255  Q
    ||||||||||||||||| ||||||||||| ||||| |  ||||||||||||||||| | |  | ||| |||||||||||  || ||||||||||||||||    
T  23048 gcttcgacttgaccgttcgcttgtgcataatatggtgctgaagtcagcaatttgaatcctatgtctttggcaaattttgctatctttcgaccagtaaaca 22949  T
Q  256 cggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttcaa 355  Q
      |||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||| ||||||| ||||||| |||||| ||||||||    
T  22948 tagatccttggtctgtggtaatggtttctggaataccaaatctatagataatagatttttggatgaaacttataacttcatcttgggtgacatctttcaa 22849  T
Q  356 aggtatttcttc--tccatttcgtgaaataatctatccctaccaaaatgtatttatacccttt 416  Q
    ||| ||| ||||  ||||||| |||||||| ||||| ||||||||||||||||||||||||||    
T  22848 aggaattgcttctatccattttgtgaaatagtctatgcctaccaaaatgtatttatacccttt 22786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 156 - 422
Target Start/End: Complemental strand, 8180 - 7912
Alignment:
Q  156 gcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaaca 255  Q
    ||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||| | |  | ||| |  ||||||||  || ||||||||||||||||    
T  8180 gcttcgacttgaccgttcgcttgtgcataatatggtgttgaagtcagcaatttgaatcctatgtctttgttaaattttgctatctttcgaccagtaaaca 8081  T
Q  256 cggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttcaa 355  Q
      |||||||||||||||||||| |||| |||||||||||| ||||| ||||| ||||||||||||||| ||||||| ||||||| |||||| ||||||||    
T  8080 tagatccttggtctgtggtaatggtttttggaataccaaatctatagataatagatttttggatgaaacttataacttcatcttgggtgacatctttcaa 7981  T
Q  356 aggtatttcttc--tccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    ||| ||| ||||  ||||||| |||||||| | |||||||||||||||||||||||||||||| |||||    
T  7980 aggaattgcttctatccattttgtgaaatagtttatccctaccaaaatgtatttataccctttcgatga 7912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 8335 - 8242
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttcatg 95  Q
    ||||||||||||| || |  || |||||||| || || || ||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  8335 catcatgaccaaacgttattctaaatggtgtagtatttgttgattccttgggagatgttcgacatgcccacagagcttcgcctaaaacttcatg 8242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 23203 - 23109
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttcatgc 96  Q
    ||||||||||||| || |  || |||||||| || || || ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||    
T  23203 catcatgaccaaacgttattctaaatggtgtagtatttgttgattccttgggagatgttcgacaggcccacagagcttcgcctaaaacttcatgc 23109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 154 - 422
Target Start/End: Original strand, 12028549 - 12028819
Alignment:
Q  154 ctgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaa 253  Q
    ||||||| |||||||| |||||||| ||||||||||| |||||||| ||||||||||| | || | |||| ||||| |||  ||||||||||||||||||    
T  12028549 ctgcttcaacttgaccatttgcttgcgcatagtatggtgtcgaagtaagcaatttgaagcctgtgtcttcagcaaactttaccatttttcgaccagtaaa 12028648  T
Q  254 cacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttc 353  Q
    ||| ||| |||||||||| ||||| |||||| |||| | ||||||||| |||||||||||||| ||||| |||||||||||||| |  ||||||||||||    
T  12028649 cacagattcttggtctgtagtaatggtttctagaatgcaaaacctatagataatggatttttgaatgaagtttataacctcatcctgtgtgacctctttc 12028748  T
Q  354 aaaggtatttcttc--tccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    ||||| ||| | ||  |||||||||||||||| ||||| ||||||||||||||| |||| ||||| |||||    
T  12028749 aaaggaattgcctctatccatttcgtgaaatagtctattcctaccaaaatgtatctatatcctttcgatga 12028819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 154 - 422
Target Start/End: Complemental strand, 13033167 - 13032897
Alignment:
Q  154 ctgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaa 253  Q
    ||||||| |||||||| |||||||| ||||| ||||  | |||||| | ||||||||| | |||| | || ||||| |||| ||||||||||||||||||    
T  13033167 ctgcttcaacttgaccatttgcttgcgcataatatgctgacgaagttatcaatttgaagcctgcgtcctcagcaaactttgccatttttcgaccagtaaa 13033068  T
Q  254 cacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttc 353  Q
     |  |||||||||||||| ||||| ||||||||||| || ||||| || || |||||||| || | |||||||||||  ||||| |  ||||||||||||    
T  13033067 tatagatccttggtctgtagtaatggtttctggaatgccgaacctgtagatgatggatttctgaacgaaatttataaattcatcatgtgtgacctctttc 13032968  T
Q  354 aaaggtatttcttc--tccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    ||||| ||| | ||  ||||||| |||||||| ||||| ||||||||||| |||||||| ||||| |||||    
T  13032967 aaaggaattgcctctatccattttgtgaaatagtctattcctaccaaaatatatttatagcctttcgatga 13032897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 154 - 395
Target Start/End: Original strand, 7361590 - 7361833
Alignment:
Q  154 ctgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaa 253  Q
    ||||||| |||||||| ||||| |||||||||||||| |||||||| |||||||| || | ||   ||||||| |||||   ||| ||||||||||||||    
T  7361590 ctgcttcaacttgaccatttgcctgtgcatagtatggtgtcgaagttagcaatttaaagcctgtatcttcggcgaatttcaccatctttcgaccagtaaa 7361689  T
Q  254 cacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttc 353  Q
     |||||||||||||||||||| || ||||||||||||||||||||||| || ||| | |||||||| ||  ||||||| || ||||  || || |||||     
T  7361690 tacggatccttggtctgtggttatggtttctggaataccaaacctatagatgatgaacttttggataaagcttataacttcctcttgagtaacatctttt 7361789  T
Q  354 aaaggtatttcttc--tccatttcgtgaaataatctatccctac 395  Q
    || || ||| ||||  |||||||||| |||||||||||||||||    
T  7361790 aagggaattgcttctatccatttcgtaaaataatctatccctac 7361833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 154 - 395
Target Start/End: Original strand, 14689587 - 14689830
Alignment:
Q  154 ctgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaa 253  Q
    ||||||| || ||||| ||||| |||||||||||||| |||||||| |||||||| || | ||   ||||||||||||||  ||| ||||||||||||||    
T  14689587 ctgcttcaacctgaccatttgcctgtgcatagtatggtgtcgaagttagcaatttaaagcctgtatcttcggcaaattttaccatctttcgaccagtaaa 14689686  T
Q  254 cacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttc 353  Q
     ||||||||||||| |||||| || ||||||||||||||||||||||| |  ||| | |||||||| ||  ||||||| || ||||  ||||| || ||     
T  14689687 tacggatccttggtttgtggttatggtttctggaataccaaacctatagacgatgaacttttggataaagcttataacttcctcttgagtgacatccttt 14689786  T
Q  354 aaaggtatttcttc--tccatttcgtgaaataatctatccctac 395  Q
    ||||| ||| ||||  ||||||| || ||||||||||| |||||    
T  14689787 aaagggattgcttctatccattttgtaaaataatctattcctac 14689830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 154 - 422
Target Start/End: Complemental strand, 10156957 - 10156687
Alignment:
Q  154 ctgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaa 253  Q
    ||||||| || ||||| ||||||||||| || ||||| ||||| || |||||||| |||| |    ||||||| ||||| | ||||||||||||||| ||    
T  10156957 ctgcttcaacctgaccatttgcttgtgcttaatatggtgtcgaggttagcaatttaaaacctatatcttcggcgaatttcgccatttttcgaccagtgaa 10156858  T
Q  254 cacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttc 353  Q
     ||||| ||||||||||||||||| ||||| |||||||| |||||||| || ||| | || ||||||||| ||||||| || ||||  ||||| |||||     
T  10156857 tacggacccttggtctgtggtaatggtttccggaataccgaacctatagatgatgaacttctggatgaaacttataacttcctcttgagtgacatctttt 10156758  T
Q  354 aaaggtatt--tcttctccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    || || |||  | || ||||||| |||||||||||||| ||||| || |||||| |||| ||||| |||||    
T  10156757 aagggaattgcttttatccattttgtgaaataatctattcctactaagatgtatctatatcctttcgatga 10156687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 12028398 - 12028490
Alignment:
Q  4 tcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttcatgc 96  Q
    |||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  12028398 tcatgaccaaatgttagtctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacaaagcttcacctaaatcttcatgc 12028490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 154 - 422
Target Start/End: Complemental strand, 10786204 - 10785935
Alignment:
Q  154 ctgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaa 253  Q
    ||||||| |||||||| |||||||||||||||||||  |||||||| |||||||| |||| ||   |||||||| ||||   ||||||||||||||| ||    
T  10786204 ctgcttcaacttgaccatttgcttgtgcatagtatgt-gtcgaagttagcaatttaaaacctgtatcttcggcacatttcaccatttttcgaccagtgaa 10786106  T
Q  254 cacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttc 353  Q
     |  ||||||||||||||||| || ||||||||||||||||||||||| || ||| |||||||||| ||  ||||||| || ||||  || || |||||     
T  10786105 tattgatccttggtctgtggttatggtttctggaataccaaacctatagatgatgaatttttggataaagcttataacttcctcttgagtaacatctttt 10786006  T
Q  354 aaaggtatttcttc--tccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    || || ||  ||||  ||||||| || |||||||||||||| || || || ||||| || ||||| |||||    
T  10786005 aagggaatcgcttctatccattttgtaaaataatctatccccactaagatatatttgtatcctttcgatga 10785935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 13033318 - 13033226
Alignment:
Q  4 tcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttcatgc 96  Q
    |||||||||| ||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| || ||||||||||||    
T  13033318 tcatgaccaactgttagtctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacaaggcttcgcccaaaacttcatgc 13033226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 14689434 - 14689518
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaa 86  Q
    |||||||||||||||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||| | |||||| |||||    
T  14689434 catcatgaccaaatgtcaacctaaaaggtgtagtgtttgtcgattctttgggagatgttcgacatgcccataaagcttctcctaa 14689518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 10157110 - 10157019
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttca 93  Q
    |||||||||||||||| | ||| || ||||||||||| ||||||||||| ||||||||| |||||||||||| |||||  |||| |||||||    
T  10157110 catcatgaccaaatgttagcctaaaaggtgtggtgtttgtcgattcttttggagatgtttgacatgcccacaaagctttgcctagaacttca 10157019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 7361437 - 7361521
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaa 86  Q
    |||||||||||||||| ||||| || ||||| |||||  |||||||||||||||| |||||||||||||| | |||||| |||||    
T  7361437 catcatgaccaaatgttaacctaaaaggtgtagtgtttatcgattctttgggagacgttcgacatgcccataaagcttcgcctaa 7361521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 10786357 - 10786273
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaa 86  Q
    ||||||||||||||||  | ||||| ||||| || || ||||||||||||||||| |||||||| ||||| | |||||| |||||    
T  10786357 catcatgaccaaatgtcgatctgaaaggtgtagtatttgtcgattctttgggagaagttcgacacgcccataaagcttcgcctaa 10786273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 138510 - 138588
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttc 80  Q
    ||||||||||||| || |  || || ||||||||||| ||| ||||||| ||||| |||||||||||||| | ||||||    
T  138510 catcatgaccaaacgttagtctaaacggtgtggtgtttgtcaattctttaggagacgttcgacatgcccataaagcttc 138588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 154 - 422
Target Start/End: Complemental strand, 24920537 - 24920267
Alignment:
Q  154 ctgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaa 253  Q
    ||||||| |||||||| |||||||||||||| || || |||||||| ||||||||||| | |  | |||||||||| |||| ||| ||||||| ||| ||    
T  24920537 ctgcttcaacttgaccatttgcttgtgcataatagggtgtcgaagttagcaatttgaatcctatgtcttcggcaaactttgccatctttcgactagtgaa 24920438  T
Q  254 cacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttc 353  Q
    ||||||||||||||||||||| |  ||||||||||||||||| ||||| |||||||| |||||||||||| ||||||| |||||||  ||||| ||||||    
T  24920437 cacggatccttggtctgtggtgacggtttctggaataccaaatctatagataatggacttttggatgaaacttataacttcatcttgagtgacatctttc 24920338  T
Q  354 aaaggtatttcttc--tccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    || || ||| | ||  ||||||| |||||||||||||||||||||||||||||| |||||||||| |||||    
T  24920337 aagggaattgcctctatccattttgtgaaataatctatccctaccaaaatgtatctataccctttcgatga 24920267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 157 - 395
Target Start/End: Original strand, 23622606 - 23622846
Alignment:
Q  157 cttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaacac 256  Q
    ||||||| ||||| || ||||| ||||| ||||| |||||||| |||||||| || | ||   |||||| |||||| | ||| ||||||||||| || ||    
T  23622606 cttcgacctgaccattcgcttgcgcataatatggtgtcgaagttagcaatttaaagcctgtatcttcggaaaatttcgccatctttcgaccagtgaatac 23622705  T
Q  257 ggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttcaaa 356  Q
    ||||||||||||||||||  | |||||||||||||| |||||||| || ||| | |||||||||||| ||||||| || ||||| || || ||||| ||     
T  23622706 ggatccttggtctgtggttgtggtttctggaataccgaacctatagatgatgaacttttggatgaaacttataacttcctcttaagtaacatcttttaag 23622805  T
Q  357 ggtatttcttc--tccatttcgtgaaataatctatccctac 395  Q
    || ||| ||||  ||||||| || ||||||||||| |||||    
T  23622806 ggaattgcttctatccattttgtaaaataatctattcctac 23622846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 156 - 422
Target Start/End: Original strand, 23197001 - 23197269
Alignment:
Q  156 gcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaaca 255  Q
    ||||| || ||||| || ||||| ||||| ||||| |||||||| || ||||| || | || | |||||||||| || | ||| ||||||||||| || |    
T  23197001 gcttcaacctgaccattcgcttgcgcataatatggtgtcgaagttagtaatttaaagcctgtgtcttcggcaaacttcgccatctttcgaccagtgaata 23197100  T
Q  256 cggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttcaa 355  Q
    ||||||||||||| ||||| || |||||||| ||||| |||||||| |||||| | || ||||||||  ||||||| || ||||  || || |||||  |    
T  23197101 cggatccttggtccgtggttatggtttctgggataccgaacctatagataatgaacttctggatgaagcttataacttcttcttgagtaacatcttttga 23197200  T
Q  356 aggtatttcttc--tccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
     || ||| ||||  ||||||| |||||||||||||| ||||| || |||||| |||| ||||| |||||    
T  23197201 tggaattgcttctatccattttgtgaaataatctattcctactaagatgtatctataacctttcgatga 23197269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 422
Target Start/End: Original strand, 23810153 - 23810423
Alignment:
Q  154 ctgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaa 253  Q
    |||| ||||| ||||| |||||||  ||||| ||||| |||||||| |  ||||| ||||  | |  ||| |||||||||  ||||||||||||||||||    
T  23810153 ctgcctcgacctgaccatttgcttaggcataatatggtgtcgaagttaataatttaaaacccgtgttttcagcaaattttaccatttttcgaccagtaaa 23810252  T
Q  254 cacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttc 353  Q
    ||| ||||||||||| || || || ||||||||||| ||||| |||||||| ||| | || || |||||||| ||||| || ||||  || ||||||||     
T  23810253 cacagatccttggtccgtagtgatagtttctggaatgccaaatctataaatgatgtaattctgaatgaaattaataacgtcctcttgagtaacctctttt 23810352  T
Q  354 aaaggtatttcttc--tccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    ||||| ||  | ||  ||||||| |||||||| ||||| || ||||| ||||||||||  ||||| |||||    
T  23810353 aaagggatcgcctctatccatttggtgaaatagtctattcccaccaagatgtatttatggcctttcgatga 23810423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 24920690 - 24920599
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttca 93  Q
    |||||||||||||||| | ||| || |||||||| || |||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  24920690 catcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggagatgttcgacatgcccacaaagcttcgcctaaaacttca 24920599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 171 - 422
Target Start/End: Complemental strand, 22642336 - 22642083
Alignment:
Q  171 tttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaacacggatccttggtctg 270  Q
    |||||||| ||||| ||||| |||||||| || ||||| || | || | ||||||||||||| | ||| ||||||||||| || |||||| |||||||||    
T  22642336 tttgcttgcgcataatatggtgtcgaagttagtaatttaaagcctgtgtcttcggcaaatttcgccatctttcgaccagtgaatacggattcttggtctg 22642237  T
Q  271 tggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttcaaaggtatttcttc--t 368  Q
    |||| || |||||||||||||| |||||||| || ||| | || ||||| ||| ||||||| || ||||  || || ||||| || || ||| ||||  |    
T  22642236 tggttatggtttctggaataccgaacctatagatgatgaacttctggataaaacttataacttcctcttgagtaacatcttttaagggaattgcttctat 22642137  T
Q  369 ccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    | |||| || ||||||||||| ||||| || || ||||| || ||||| |||||    
T  22642136 ctattttgtaaaataatctattcctactaagatatatttgtatcctttcgatga 22642083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 22642506 - 22642415
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttca 93  Q
    |||||||||| ||||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||||| |||||| ||||||| ||||    
T  22642506 catcatgaccgaatgtcaacctaaaaggtgtagtgtttgtcgattctttgggagatgttcgacatgcccacaaagcttcgcctaaaatttca 22642415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 23196846 - 23196930
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaa 86  Q
    |||||||||||||||| | ||| || ||||| ||||| |||||||||||||||||||||||||||||||||| ||| || |||||    
T  23196846 catcatgaccaaatgttagcctaaaaggtgtagtgtttgtcgattctttgggagatgttcgacatgcccacaaagcctcgcctaa 23196930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 23622450 - 23622521
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccaca 73  Q
    |||||||||||||||| ||||| || ||||| ||||| ||| ||||||| ||||||||||||||||||||||    
T  23622450 catcatgaccaaatgtcaacctaaaaggtgtagtgtttgtcaattcttttggagatgttcgacatgcccaca 23622521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 23810000 - 23810078
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttc 80  Q
    |||||||||||||||  || || |||||||| ||||| ||||||||||| |||||  ||||||||||||| | ||||||    
T  23810000 catcatgaccaaatgctaatctaaatggtgtagtgtttgtcgattctttaggagacattcgacatgcccataaagcttc 23810078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 154 - 422
Target Start/End: Original strand, 14743122 - 14743392
Alignment:
Q  154 ctgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaa 253  Q
    ||||||| || ||||| |||||||||||||| || || ||||||||||||||||| |||| |  | |||||||||| |||| ||| ||||||||||| ||    
T  14743122 ctgcttcaacctgaccatttgcttgtgcataatagggtgtcgaagtcagcaatttaaaacctatgtcttcggcaaactttgccatctttcgaccagtgaa 14743221  T
Q  254 cacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttc 353  Q
    ||||||||||||||||||||| || |||| | |||||||||||||||| |||||| |||| ||||||||| ||||||| || ||||  || || ||||||    
T  14743222 cacggatccttggtctgtggttatggtttttagaataccaaacctatagataatgaatttctggatgaaacttataacttcctcttgagtaacatctttc 14743321  T
Q  354 aaaggtatttcttc--tccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    || || ||| | ||  ||||||| || ||||||||||| |||||||| |||||| |||| ||||| |||||    
T  14743322 aaggggattgcctctatccattttgtaaaataatctattcctaccaagatgtatctatatcctttcgatga 14743392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 183 - 422
Target Start/End: Original strand, 13285550 - 13285791
Alignment:
Q  183 tagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaacacggatccttggtctgtggtaattgttt 282  Q
    |||||||| ||||||||||||||||| || | ||   ||||||||||||||| ||| ||||||||||| || ||||||| |||||||||||| || ||||    
T  13285550 tagtatggtgtcgaagtcagcaatttaaagcctgtatcttcggcaaattttgccatctttcgaccagtgaatacggatctttggtctgtggttatggttt 13285649  T
Q  283 ctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttcaaaggtatttcttc--tccatttcgtgaa 380  Q
    |||||||||| |||||||| |||||| | || ||||||||  ||||||| || ||||  || || ||||| || || ||| ||||  ||||||| |||||    
T  13285650 ctggaataccgaacctatagataatgaacttctggatgaagcttataacttcttcttgagtaacatcttttaatgggattgcttcaatccattttgtgaa 13285749  T
Q  381 ataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    ||||||||| ||||| || |||||| |||| ||||| |||||    
T  13285750 ataatctattcctactaagatgtatctatatcctttcgatga 13285791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 257 - 422
Target Start/End: Original strand, 15150154 - 15150321
Alignment:
Q  257 ggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttcaaa 356  Q
    |||||||||||||||||| || |||||||||||||| |||||||| || ||| | || ||||||||| ||||||| || ||||  || || ||||| ||     
T  15150154 ggatccttggtctgtggttatggtttctggaataccgaacctatagatgatgaacttctggatgaaacttataacttcctcttgagtaacatcttttaag 15150253  T
Q  357 ggtatttcttc--tccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    || ||| ||||  |||||||||||||||||||||| ||||| ||||||||| |||| ||||| |||||    
T  15150254 ggaattgcttctatccatttcgtgaaataatctattcctactaaaatgtatctatagcctttcgatga 15150321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 14563233 - 14563324
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttca 93  Q
    |||||||||||||||| ||||| || || || ||||| |||||||||||||||||||||||||||||||||| ||| || ||||||| ||||    
T  14563233 catcatgaccaaatgttaacctaaaaggcgtagtgtttgtcgattctttgggagatgttcgacatgcccacaaagcctcgcctaaaatttca 14563324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 14742969 - 14743058
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaactt 91  Q
    ||||||| |||||||| | ||| || |||||||| || || ||||||||||||||||||||||||||||| | |||||| ||||||||||    
T  14742969 catcatggccaaatgtcagcctaaaaggtgtggtatttgttgattctttgggagatgttcgacatgcccataaagcttcgcctaaaactt 14743058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 13285368 - 13285439
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccaca 73  Q
    |||||||||||||||| |||||  | ||||||||||||||||| ||||| ||||||||| ||||||||||||    
T  13285368 catcatgaccaaatgttaacctagaaggtgtggtgttcgtcgactcttttggagatgtttgacatgcccaca 13285439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 14563403 - 14563482
Alignment:
Q  171 tttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagt 250  Q
    |||||||||||||||||||| |||||||| |||||||| || | ||   ||||||||||||| | ||| |||||||||||    
T  14563403 tttgcttgtgcatagtatggtgtcgaagttagcaatttaaagcctgtatcttcggcaaatttcgacatctttcgaccagt 14563482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 4637660 - 4637602
Alignment:
Q  155 tgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaac 213  Q
    ||||||||||||||| |||||||| ||||| ||||| || ||||| | |||||||||||    
T  4637660 tgcttcgacttgaccatttgcttgagcataatatggtgttgaagttaacaatttgaaac 4637602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 171 - 422
Target Start/End: Complemental strand, 36238 - 35985
Alignment:
Q  171 tttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaacacggatccttggtctg 270  Q
    ||||||||||||||||||||||||||||| | |||||| || | ||   ||||||||||||| | ||| ||||||||||| || ||||||||||||||||    
T  36238 tttgcttgtgcatagtatggcgtcgaagttatcaatttaaagcctgtatcttcggcaaatttcgacatctttcgaccagtgaatacggatccttggtctg 36139  T
Q  271 tggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttcaaaggtatttcttc--t 368  Q
    |||| || |||||||||||||| |||||||| || ||| | || ||||||||| ||||||| || ||||  || || ||||| || || ||| ||||  |    
T  36138 tggttatggtttctggaataccgaacctatagatgatgaacttctggatgaaacttataacttcctcttgagtaacatcttttaagggaattgcttctat 36039  T
Q  369 ccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    ||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||    
T  36038 ccatttcgtgaaataatctattcctactaaaatgtatttatatcctttcgatga 35985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 36408 - 36317
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttca 93  Q
    |||||||||||||||| ||||| || || || ||||| ||||||||||||||||| |||||||||||| ||| ||| || ||||||| ||||    
T  36408 catcatgaccaaatgttaacctaaaaggcgtagtgtttgtcgattctttgggagaggttcgacatgcctacaaagcctcgcctaaaatttca 36317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 154 - 422
Target Start/End: Original strand, 135199 - 135469
Alignment:
Q  154 ctgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaa 253  Q
    ||||||| || || || |||| |||||| || || || |||||||| |||||||| |||| |  | |||||||||| |||| ||| ||||||||||| ||    
T  135199 ctgcttcaacctggccatttgtttgtgcgtaatagggtgtcgaagttagcaatttaaaacctatgtcttcggcaaactttgccatctttcgaccagtgaa 135298  T
Q  254 cacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttc 353  Q
    ||||||||||||||||||||| || ||||||||||||||||| ||||| |||||| | || ||||||||| ||||||| || ||||  || || ||| ||    
T  135299 cacggatccttggtctgtggtgatggtttctggaataccaaatctatagataatgaacttgtggatgaaacttataacttcctcttgagtaacatctctc 135398  T
Q  354 aaaggtatttcttc--tccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    || || ||| | ||  ||||||| |||||||||||||| |||||||||||||||||||||||||| |||||    
T  135399 aaggggattgcctctatccattttgtgaaataatctatgcctaccaaaatgtatttataccctttcgatga 135469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 128645 - 128737
Alignment:
Q  1 tcatcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttca 93  Q
    ||||||||||||||||| | ||| || |||||||| || |||||||||||||||||||||||||| ||||||| |||||| ||||||||||||    
T  128645 tcatcatgaccaaatgtcagcctaaaaggtgtggtatttgtcgattctttgggagatgttcgacaagcccacaaagcttcgcctaaaacttca 128737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 171 - 422
Target Start/End: Original strand, 33817 - 34070
Alignment:
Q  171 tttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaacacggatccttggtctg 270  Q
    ||||||||||||||||||||||||||||| | |||||| || | ||   ||||||||||||| | ||| ||||||||||| || ||||||||||||||||    
T  33817 tttgcttgtgcatagtatggcgtcgaagttatcaatttaaagcttgtatcttcggcaaatttcgacatctttcgaccagtgaatacggatccttggtctg 33916  T
Q  271 tggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttcaaaggtatttcttc--t 368  Q
    |||| || |||||||||||||| |||||||| || ||| | || ||||||||| ||||||| || ||||  || || ||||| || || ||| ||||  |    
T  33917 tggttatggtttctggaataccgaacctatagatgatgaacttctggatgaaacttataacttcctcttgagtaacatcttttaagggaattgcttctat 34016  T
Q  369 ccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    ||||||||||||||||||||| ||||| ||||||||| |||| ||||| |||||    
T  34017 ccatttcgtgaaataatctattcctactaaaatgtatctataacctttcgatga 34070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 33647 - 33738
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttca 93  Q
    |||||||||||||||| ||||| || || || ||||| ||||||||||||||||| |||||||||||||||| ||| || ||||||| ||||    
T  33647 catcatgaccaaatgttaacctaaaaggcgtagtgtttgtcgattctttgggagaggttcgacatgcccacaaagcctcgcctaaaatttca 33738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0304 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: scaffold0304
Description:

Target: scaffold0304; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 171 - 422
Target Start/End: Original strand, 19197 - 19450
Alignment:
Q  171 tttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaacacggatccttggtctg 270  Q
    |||||||||||||||||||| || ||||| | |||||| || | ||   ||||||||||||| | ||| ||||||||||| || ||||||||||||||||    
T  19197 tttgcttgtgcatagtatggagtagaagttaacaatttaaagcctgtatcttcggcaaatttcgacatctttcgaccagtgaatacggatccttggtctg 19296  T
Q  271 tggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttcaaaggtatttcttc--t 368  Q
    |||| || |||||||||||||| |||||||| || ||| | |||||||||||| ||||||| || ||||  || || ||||| || || ||| ||||  |    
T  19297 tggttatggtttctggaataccgaacctatagatgatgaacttttggatgaaacttataacttcctcttgagtaacatcttttaagggaattgcttctat 19396  T
Q  369 ccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    ||||||||||||||||||||| ||||| ||||||||| |||| ||||| |||||    
T  19397 ccatttcgtgaaataatctattcctactaaaatgtatctatagcctttcgatga 19450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0304; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 19027 - 19118
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttca 93  Q
    |||||||||||||||| ||||| || ||||| |||||  |||||||||||||||||||| |||||||||||| ||| || ||||||| ||||    
T  19027 catcatgaccaaatgttaacctaaaaggtgtagtgtttttcgattctttgggagatgttagacatgcccacaaagcctcgcctaaaatttca 19118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 165 - 422
Target Start/End: Complemental strand, 35004 - 34745
Alignment:
Q  165 tgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaacacggatcctt 264  Q
    ||||| |||||||||||||| ||||||||||| || |||||||| || | ||   ||||||||||||| | ||| ||||||||||| || ||||||||||    
T  35004 tgaccatttgcttgtgcataatatggcgtcgaggttagcaatttaaagcctgtatcttcggcaaatttcgccatctttcgaccagtgaatacggatcctt 34905  T
Q  265 ggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttcaaaggtatttc 364  Q
    |||||||||| || |||||||||||||| |||||||| || ||| | |  ||||||||| ||||||| || ||||  || || ||||| || || ||| |    
T  34904 ggtctgtggttatggtttctggaataccgaacctatagatgatgaactcctggatgaaacttataacttcctcttgagtaacatcttttaagggaattgc 34805  T
Q  365 ttc--tccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    |||  ||||||| |||||||||||||| ||||| ||||||||| |||| ||||| |||||    
T  34804 ttctatccattttgtgaaataatctattcctactaaaatgtatctatatcctttcgatga 34745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 35168 - 35077
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttca 93  Q
    |||||||||||||||| ||||| || ||||||||||| ||||||||||| |||||||||||||||||||||| |||||| ||||||| ||||    
T  35168 catcatgaccaaatgtcaacctaaaaggtgtggtgtttgtcgattcttttggagatgttcgacatgcccacaaagcttcgcctaaaatttca 35077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 154 - 395
Target Start/End: Original strand, 14338801 - 14339044
Alignment:
Q  154 ctgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaa 253  Q
    ||||||| |||||||| |||||||||||||||||||| |||||||| |||||||| || | |    ||||||| |||||   ||| ||||| ||||||||    
T  14338801 ctgcttccacttgaccatttgcttgtgcatagtatggtgtcgaagttagcaatttaaagcctttatcttcggcgaatttcaccatctttcggccagtaaa 14338900  T
Q  254 cacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttc 353  Q
     |||||||||||||| ||||| || ||||||||||||||||||||||| || ||| | |||||||| ||  ||||||| || ||||  || || |||||     
T  14338901 tacggatccttggtccgtggttatggtttctggaataccaaacctatagatgatgaacttttggataaagcttataacttcctcttgagtaacatctttt 14339000  T
Q  354 aaaggtatttcttc--tccatttcgtgaaataatctatccctac 395  Q
    || || ||| ||||  |||||||||| |||||||||||||||||    
T  14339001 aagggaattgcttctatccatttcgtaaaataatctatccctac 14339044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 180 - 395
Target Start/End: Original strand, 18167803 - 18168020
Alignment:
Q  180 gcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaacacggatccttggtctgtggtaattg 279  Q
    ||||||||||| |||||||| |||||||| || | ||   ||||||||||||| | ||| ||||||||||| || || ||||||||||||||||| || |    
T  18167803 gcatagtatggtgtcgaagttagcaatttaaagcctgtatcttcggcaaatttcgccatctttcgaccagtgaatacagatccttggtctgtggttatgg 18167902  T
Q  280 tttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttcaaaggtatttcttc--tccatttcgt 377  Q
    ||||||||||||| |||||||| || ||| | |||||||||||| ||||||| || ||||  || || ||||| || || ||| ||||  ||||||| ||    
T  18167903 tttctggaataccgaacctatagatgatgaacttttggatgaaacttataacttcctcttgagtaacatcttttaagggaattgcttctatccattttgt 18168002  T
Q  378 gaaataatctatccctac 395  Q
     ||||||||||| |||||    
T  18168003 aaaataatctattcctac 18168020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 18167624 - 18167715
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttca 93  Q
    |||||||||||||||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||||| ||| || ||||||| ||||    
T  18167624 catcatgaccaaatgtcaacctaaaaggtgtagtgtttgtcgattctttgggagatgttcgacatgcccacaaagcctcgcctaaaatttca 18167715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 322
Target Start/End: Original strand, 14163328 - 14163496
Alignment:
Q  154 ctgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaa 253  Q
    ||||| |||||||||| |||||||| ||||| ||||| |||||||| | || |||  | | ||   |||  |||||||||  |||||||||||| |||||    
T  14163328 ctgctccgacttgaccatttgcttgggcataatatggtgtcgaagttaacagtttatatcctgtttcttgcgcaaattttaccatttttcgacctgtaaa 14163427  T
Q  254 cacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaa 322  Q
    ||| |||||||| |  || || ||  |||||||||| ||||||| |||||| ||  |||| ||||||||    
T  14163428 cacagatccttgattcgtagtgatgatttctggaattccaaacccataaatgatatatttctggatgaa 14163496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 76; Significance: 5e-35; HSPs: 6)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 165 - 409
Target Start/End: Complemental strand, 113493 - 113247
Alignment:
Q  165 tgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaacacggatcctt 264  Q
    ||||| |||||||| ||||| ||||||||||| || || | ||| |||| ||   |||| ||||| |||  |||||||||||||||||| || |||||||    
T  113493 tgaccatttgcttgggcatattatggcgtcgaggttagtagtttaaaacctgtatcttcagcaaactttaccatttttcgaccagtaaatacagatcctt 113394  T
Q  265 ggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttcaaaggtatttc 364  Q
    ||||||| ||||| ||||||||||| ||||| || || || |||||||| || | ||||||||| ||||||||||| || || ||||||| |||  || |    
T  113393 ggtctgtagtaatggtttctggaatgccaaatctgtagatgatggatttctgaacgaaatttatgacctcatcttacgtaacttctttcagaggagttgc 113294  T
Q  365 ttc--tccatttcgtgaaataatctatccctaccaaaatgtatttat 409  Q
    |||  ||||||| |||||||||||||| ||||||| ||| |||||||    
T  113293 ttctatccattttgtgaaataatctattcctaccagaatatatttat 113247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 165 - 409
Target Start/End: Complemental strand, 152809 - 152563
Alignment:
Q  165 tgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaacacggatcctt 264  Q
    ||||| ||| |||| ||||| ||||||||||| || || | ||| |||| ||   |||| ||||| |||  |||||||||||||||||| || |||||||    
T  152809 tgaccattttcttgggcatattatggcgtcgaggttagaagtttaaaacctgtatcttcagcaaactttaccatttttcgaccagtaaatacagatcctt 152710  T
Q  265 ggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttcaaaggtatttc 364  Q
    ||||||| ||||| ||||||||||| ||||| ||||| || |||||||| || | ||||||||| ||||||||||  || || ||||||| |||  || |    
T  152709 ggtctgtagtaatggtttctggaatgccaaatctatagatgatggatttctgaacgaaatttatgacctcatcttgcgtaacttctttcagaggagttgc 152610  T
Q  365 ttc--tccatttcgtgaaataatctatccctaccaaaatgtatttat 409  Q
    |||  ||||||| |||||||||| ||| ||||||| ||| |||||||    
T  152609 ttctatccattttgtgaaataatatattcctaccagaatatatttat 152563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 236 - 339
Target Start/End: Complemental strand, 109181 - 109078
Alignment:
Q  236 catttttcgaccagtaaacacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctca 335  Q
    |||||||| ||||||||| || |||||||||||||| ||||| ||||||||||| ||||| || || || |||||||| || ||||||||||| ||||||    
T  109181 catttttcaaccagtaaatacagatccttggtctgtagtaatggtttctggaatgccaaatctgtagatgatggatttctgaatgaaatttatgacctca 109082  T
Q  336 tctt 339  Q
    ||||    
T  109081 tctt 109078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 109366 - 109272
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttcatgc 96  Q
    ||||||| |||||||| ||  | ||||| |||||||| ||||||||||| |||||||||||||||||||| |  |||| ||| || |||||||||    
T  109366 catcatggccaaatgttaatttaaatggcgtggtgtttgtcgattctttaggagatgttcgacatgcccataaggcttgacccaagacttcatgc 109272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 152950 - 152879
Alignment:
Q  25 aatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttcatgc 96  Q
    ||||| ||||||||  |||||||||| |||||||||||||||||||| |  |||||||| || |||||||||    
T  152950 aatggcgtggtgtttttcgattctttaggagatgttcgacatgcccataaggcttcacccaagacttcatgc 152879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 113656 - 113563
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttcatgc 96  Q
    ||||||| |||||||| ||  | |||||  ||||||| ||||||||||| |||||||||||||| ||||| |  |||||||| || |||||||||    
T  113656 catcatggccaaatgttaatttaaatggcatggtgtttgtcgattctttaggagatgttcgaca-gcccataaggcttcacccaagacttcatgc 113563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0239 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 154 - 312
Target Start/End: Original strand, 25857 - 26015
Alignment:
Q  154 ctgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaa 253  Q
    ||||||| |||||||| |||||||| |||||||||||  ||||||| ||||||||||| |  ||| | |||||||| |||  ||||||||||| ||||||    
T  25857 ctgcttcaacttgaccatttgcttgcgcatagtatggtatcgaagttagcaatttgaagcccgcgtcctcggcaaactttaccatttttcgactagtaaa 25956  T
Q  254 cacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatt 312  Q
    ||| |||||||||||||| ||||| ||||||||||| ||||||||||| || |||||||    
T  25957 cacagatccttggtctgtagtaatggtttctggaatgccaaacctatatatgatggatt 26015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0239; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 25706 - 25798
Alignment:
Q  4 tcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttcatgc 96  Q
    |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||  || || || ||||||||||||    
T  25706 tcatgaccaaatgttagtctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacaaggcctcgcccaaaacttcatgc 25798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 155 - 422
Target Start/End: Original strand, 22339739 - 22340008
Alignment:
Q  155 tgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaac 254  Q
    |||||| || ||||| |||||||||||||| || || |||||||| |  ||||| || | |    ||||||||||||||| ||| ||||||||||| |||    
T  22339739 tgcttcaacctgaccatttgcttgtgcataatagggtgtcgaagttaataatttaaagcctatatcttcggcaaattttgccatctttcgaccagtgaac 22339838  T
Q  255 acggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttca 354  Q
    |||||||||||||||||||| || ||||||||||||||||||||||| |||||| | || ||||| |||  |||||| || ||||  || || || ||||    
T  22339839 acggatccttggtctgtggttatggtttctggaataccaaacctatagataatgaacttctggataaaacctataacttcctcttgagtaacatccttca 22339938  T
Q  355 aaggtatttcttc--tccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    | || ||| | ||  ||||||| || ||||| ||||| |||||||| |||||| |||| ||||| |||||    
T  22339939 aggggattgcctctatccattttgtaaaatagtctattcctaccaagatgtatctatatcctttcgatga 22340008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 154 - 395
Target Start/End: Complemental strand, 1729021 - 1728778
Alignment:
Q  154 ctgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaa 253  Q
    ||||||| |||||| | ||||| ||||| || ||||| |||||||| |||||||| || | ||   |||||||||||||   ||||||||||||||| ||    
T  1729021 ctgcttcaacttgatcatttgcctgtgcgtattatggtgtcgaagttagcaatttaaagcctgtatcttcggcaaatttcaccatttttcgaccagtgaa 1728922  T
Q  254 cacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttc 353  Q
     |  ||||||||||||||||| || ||||||||||||||||||||||| || ||| | |||||||| ||  ||||||| || ||||  || || |||||     
T  1728921 tattgatccttggtctgtggttatggtttctggaataccaaacctatagatgatgaacttttggataaagcttataacttcctcttgagtaacatctttt 1728822  T
Q  354 aaaggtatttcttc--tccatttcgtgaaataatctatccctac 395  Q
    || || ||| ||||  ||||||| || |||||||||||||||||    
T  1728821 aagggaattgcttctatccattttgtaaaataatctatccctac 1728778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 22339585 - 22339676
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttca 93  Q
    |||||||||||||||| | ||| || ||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  22339585 catcatgaccaaatgtcagcctaaaaggtgtggtgtttgtcgattctttgggagatgttcgacatgcccacaaagcttctcctaaaacttca 22339676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 1729174 - 1729090
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaa 86  Q
    |||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||||||| || | |||||| |||||    
T  1729174 catcatgaccaaatgtcaacctgaaaggtgtagtgtttgtcgattctttgggagacgttcgacatgctcataaagcttcgcctaa 1729090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 22461028 - 22461087
Alignment:
Q  154 ctgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaac 213  Q
    |||||||||||||||| |||||||| ||||| ||||| |||||||| | |||||||||||    
T  22461028 ctgcttcgacttgaccatttgcttgagcataatatggtgtcgaagttaacaatttgaaac 22461087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 156 - 416
Target Start/End: Complemental strand, 27649 - 27387
Alignment:
Q  156 gcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaaca 255  Q
    ||||| || ||||| |||||||| ||||| ||||| ||||| || || ||||| || | ||   ||||||||||||| | ||| ||||||||||| || |    
T  27649 gcttcaacctgaccatttgcttgcgcataatatggtgtcgaggttagaaatttaaagcctgtatcttcggcaaatttcgccatctttcgaccagtgaata 27550  T
Q  256 cggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttcaa 355  Q
    ||||||||||||||||||| || |||||||| ||||| |||||||| |||||| | || ||||||||  ||||||| || ||||  || || ||||| ||    
T  27549 cggatccttggtctgtggttatggtttctgggataccgaacctatagataatgaacttctggatgaagcttataacttcttcttgagtaacatcttttaa 27450  T
Q  356 aggtatttcttc--tccatttcgtgaaataatctatccctaccaaaatgtatttatacccttt 416  Q
     || ||| ||||  ||||||| |||||||||||||| ||||| || |||||| |||| |||||    
T  27449 tggaattgcttctatccattttgtgaaataatctattcctactaagatgtatctataaccttt 27387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 27804 - 27713
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttca 93  Q
    |||||||||||||||| ||||| || ||||| ||||| |||||||||||||||||||||||||| ||||||| ||| || ||||||| ||||    
T  27804 catcatgaccaaatgttaacctaaaaggtgtagtgtttgtcgattctttgggagatgttcgacaggcccacaaagcctcgcctaaaatttca 27713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 154 - 422
Target Start/End: Original strand, 19031324 - 19031594
Alignment:
Q  154 ctgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaa 253  Q
    ||||||| |||||||| |||||||| ||||||||||| |||||||| |||||||| || | |    ||||   ||| || | ||| ||||||||||| ||    
T  19031324 ctgcttcaacttgaccatttgcttgcgcatagtatggtgtcgaagttagcaatttaaagcctatttcttcaagaaacttcgccatctttcgaccagtgaa 19031423  T
Q  254 cacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttc 353  Q
     |||||||||||||||||||| || |||||||||||||| |||||||  || ||| | || ||||||||| ||||||| || || |  || || |||||     
T  19031424 tacggatccttggtctgtggttatagtttctggaataccgaacctatttatgatgaacttctggatgaaaattataacttcctcctgagtaacatctttt 19031523  T
Q  354 aaaggtatttcttc--tccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    ||||| ||| ||||  ||||||| |||||||||| ||| |||||||| |||||| |||| ||||| |||||    
T  19031524 aaaggaattgcttctatccattttgtgaaataatttattcctaccaagatgtatctatatcctttcgatga 19031594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 19031171 - 19031262
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttca 93  Q
    |||||||||||||||| ||||| || ||||| ||||| |||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||    
T  19031171 catcatgaccaaatgttaacctaaaaggtgtagtgtttgtcgattctttgggtgatgttcgacatgcccacaaagcttcgcctaagacttca 19031262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0897 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0897
Description:

Target: scaffold0897; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 154 - 331
Target Start/End: Original strand, 442 - 619
Alignment:
Q  154 ctgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaa 253  Q
    ||||||| || ||||| || ||||| ||||||||||| |||||||| |||||||| || | ||   ||||||||||||| | ||| ||||||||||| ||    
T  442 ctgcttcaacctgaccattcgcttgcgcatagtatggtgtcgaagttagcaatttaaagcctgtatcttcggcaaatttcgccatctttcgaccagtgaa 541  T
Q  254 cacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataac 331  Q
     || ||||||||||||||||| || |||||||||||| | |||||||| || ||| | |||||||||||| |||||||    
T  542 tacagatccttggtctgtggttatggtttctggaataacgaacctatagatgatgaacttttggatgaaacttataac 619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0897; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 288 - 379
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttca 93  Q
    |||||||||| ||||| ||||| || ||||| ||||| |||||||||||| ||||||||||||||||||||| ||| || ||||||| ||||    
T  288 catcatgaccgaatgtcaacctaaaaggtgtagtgtttgtcgattctttgagagatgttcgacatgcccacaaagcctcgcctaaaatttca 379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 180 - 422
Target Start/End: Original strand, 128714 - 128958
Alignment:
Q  180 gcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaacacggatccttggtctgtggtaattg 279  Q
    ||||||||||| |||||||| |||||||| || | ||   ||||||||||||| | ||| ||||||||||| || || ||||||||||||||||| || |    
T  128714 gcatagtatggtgtcgaagttagcaatttaaagcctgtatcttcggcaaatttcgccatctttcgaccagtgaatacagatccttggtctgtggttatgg 128813  T
Q  280 tttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttcaaaggtatttcttc--tccatttcgt 377  Q
    ||||||||||| | |||||||| || ||| | |||||||||||| ||||||| || ||||  || || ||||| || || ||| ||||  ||||||| ||    
T  128814 tttctggaatagcgaacctatagatgatgaacttttggatgaaacttataacttcctcttgagtaacatcttttaagggaattgcttctatccattttgt 128913  T
Q  378 gaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
     ||||||||||| ||||| || || ||| |||| ||||| |||||    
T  128914 aaaataatctattcctactaagatatatctatatcctttcgatga 128958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 128535 - 128626
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttca 93  Q
    |||||| ||||||||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||||| ||| || ||||||| ||||    
T  128535 catcataaccaaatgtcaacctaaaaggtgtagtgtttgtcgattctttgggagatgttcgacatgcccacaaagcctcgcctaaaatttca 128626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 174 - 331
Target Start/End: Original strand, 14436 - 14593
Alignment:
Q  174 gcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaacacggatccttggtctgtgg 273  Q
    ||||| ||||| ||||| |||||||| |||||||| || | ||   ||||||||||||||| ||| ||||||||||| || |||||||||| ||||||||    
T  14436 gcttgcgcataatatggtgtcgaagttagcaatttaaagcctgtatcttcggcaaattttgccatctttcgaccagtgaatacggatcctttgtctgtgg 14535  T
Q  274 taattgtttctggaataccaaacctataaataatggatttttggatgaaatttataac 331  Q
    | || |||||||||||||| |||||||| || ||| | || ||||||||| |||||||    
T  14536 ttatggtttctggaataccgaacctatagatgatgaacttctggatgaaacttataac 14593  T

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Target: scaffold0051 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 156 - 395
Target Start/End: Complemental strand, 73473 - 73232
Alignment:
Q  156 gcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaaca 255  Q
    ||||| |||||||| |||||||||||||| |||||| ||||||| |||||||| || | ||   ||||||||||||| | ||| ||||||||||| || |    
T  73473 gcttcaacttgaccatttgcttgtgcataatatggcatcgaagttagcaatttaaagcctgtatcttcggcaaatttcgccatctttcgaccagtgaata 73374  T
Q  256 cggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttcaa 355  Q
    | || |||||||||||||| || || ||||| ||||| |||||||| || ||| | || ||||||||| ||||| | || ||||  || || ||||| ||    
T  73373 cagacccttggtctgtggttatggtctctgggataccgaacctatagatgatgaacttctggatgaaacttataccttcttcttgagtaacatcttttaa 73274  T
Q  356 aggtatttcttc--tccatttcgtgaaataatctatccctac 395  Q
     || ||| ||||  ||||||| || ||||||||||| |||||    
T  73273 tggaattgcttctatccattttgtaaaataatctattcctac 73232  T

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Target: scaffold0051; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 73616 - 73550
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgc 68  Q
    |||||||||||||||| ||||| || ||||| ||| | |||||||||||||||||||||||||||||    
T  73616 catcatgaccaaatgtcaacctaaaaggtgtagtgcttgtcgattctttgggagatgttcgacatgc 73550  T

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Target: scaffold0241 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 226 - 422
Target Start/End: Complemental strand, 15420 - 15222
Alignment:
Q  226 caaattttgtcatttttcgaccagtaaacacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatt 325  Q
    |||| |||| ||| ||| ||||||| |||||||||||||||| |||||| || ||||||||||||||||||||||| |||||| | || ||||||||| |    
T  15420 caaactttgccatcttttgaccagtgaacacggatccttggtttgtggttatggtttctggaataccaaacctatagataatgaacttctggatgaaact 15321  T
Q  326 tataacctcatcttaggtgacctctttcaaaggtatttcttc--tccatttcgtgaaataatctatccctaccaaaatgtatttatacccttttgatga 422  Q
    |||||| || ||||  || || ||||| |  || ||| | ||  ||||||| || ||||||| ||| |||||||| |||||  |||| |||||||||||    
T  15320 tataacttcctcttgagtaacatcttttacgggaattgcctctatccattttgtaaaataatttattcctaccaagatgtaactatatccttttgatga 15222  T

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Target: scaffold0241; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 18904 - 18813
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagcttcacctaaaacttca 93  Q
    |||||||||||||||| | ||| || ||||| ||||| ||||||||||| |||||||||||||||||||||| |||||| ||||||||||||    
T  18904 catcatgaccaaatgtcagcctaaaaggtgtagtgtttgtcgattctttaggagatgttcgacatgcccacaaagcttcgcctaaaacttca 18813  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 21514755 - 21514679
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgcccacagagct 78  Q
    |||||||||||||||| | ||| || ||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  21514755 catcatgaccaaatgtcagcctaaaaggtgtggtgtttgtcgattctttgggagatgttcgacatgcccacaaagct 21514679  T

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Target: scaffold0100 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 154 - 410
Target Start/End: Complemental strand, 2985 - 2727
Alignment:
Q  154 ctgcttcgacttgaccgtttgcttgtgcatagtatggcgtcgaagtcagcaatttgaaacatgcgccttcggcaaattttgtcatttttcgaccagtaaa 253  Q
    |||||||||||||||| |||||||| ||||| ||| | | ||| || |  ||||| ||||  | |  ||| |||||||||   |||||| |||| || ||    
T  2985 ctgcttcgacttgaccatttgcttgggcataatatcgtgacgaggttaataatttaaaacccgtgttttcagcaaattttactattttttgaccggtgaa 2886  T
Q  254 cacggatccttggtctgtggtaattgtttctggaataccaaacctataaataatggatttttggatgaaatttataacctcatcttaggtgacctctttc 353  Q
    ||| || ||||| ||||| ||||| |||||| |||| ||||| ||||| || ||  |||| || ||||| ||||||||||||||||  || || |||||     
T  2885 caccgacccttgatctgtcgtaatggtttctagaatgccaaatctatagattatatatttctgaatgaagtttataacctcatcttgagtaacttctttt 2786  T
Q  354 aaaggtatttcttct--ccatttcgtgaaataatctatccctaccaaaatgtatttata 410  Q
    ||||| ||| | |||  ||||||||||||||||||||| || ||||| |||||||||||    
T  2785 aaaggaattgcctctatccatttcgtgaaataatctattcccaccaagatgtatttata 2727  T

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Target: scaffold0100; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 3138 - 3069
Alignment:
Q  2 catcatgaccaaatgtgaacctgaatggtgtggtgttcgtcgattctttgggagatgttcgacatgccca 71  Q
    |||||||||||||||| || || |||||||||||||| ||||||||||| ||||||||||||||||||||    
T  3138 catcatgaccaaatgttaatctaaatggtgtggtgtttgtcgattctttaggagatgttcgacatgccca 3069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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