View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6393_low_7 (Length: 347)

Name: NF6393_low_7
Description: NF6393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6393_low_7
NF6393_low_7
[»] chr6 (5 HSPs)
chr6 (11-340)||(17296765-17297094)
chr6 (22-339)||(24154728-24155056)
chr6 (64-272)||(242662-242882)
chr6 (239-316)||(6038418-6038495)
chr6 (201-253)||(23011138-23011190)
[»] chr2 (9 HSPs)
chr2 (31-339)||(29891811-29892122)
chr2 (195-321)||(17675974-17676100)
chr2 (19-101)||(17675793-17675875)
chr2 (195-291)||(17636119-17636215)
chr2 (19-101)||(17635938-17636020)
chr2 (223-338)||(17162556-17162671)
chr2 (201-253)||(23802770-23802822)
chr2 (135-186)||(23777228-23777279)
chr2 (9-46)||(22800842-22800879)
[»] chr5 (6 HSPs)
chr5 (71-337)||(19218681-19218947)
chr5 (83-337)||(20059948-20060201)
chr5 (223-322)||(21381499-21381598)
chr5 (71-337)||(20059403-20059680)
chr5 (19-183)||(21381307-21381470)
chr5 (201-337)||(26129323-26129459)
[»] chr1 (5 HSPs)
chr1 (11-312)||(20865445-20865758)
chr1 (71-337)||(22608476-22608753)
chr1 (201-316)||(13963902-13964016)
chr1 (12-61)||(10159652-10159701)
chr1 (19-48)||(13963693-13963722)
[»] chr7 (6 HSPs)
chr7 (71-337)||(2546133-2546399)
chr7 (145-337)||(18083654-18083838)
chr7 (71-337)||(14987895-14988173)
chr7 (71-337)||(15417506-15417784)
chr7 (226-335)||(7948555-7948664)
chr7 (11-49)||(18099147-18099185)
[»] scaffold2096 (1 HSPs)
scaffold2096 (71-337)||(371-648)
[»] chr3 (4 HSPs)
chr3 (75-337)||(29615372-29615633)
chr3 (201-254)||(22927892-22927945)
chr3 (19-48)||(4025634-4025663)
chr3 (280-316)||(4025341-4025377)
[»] scaffold0065 (1 HSPs)
scaffold0065 (239-328)||(14739-14828)
[»] chr8 (4 HSPs)
chr8 (261-319)||(27124227-27124285)
chr8 (280-336)||(23354973-23355029)
chr8 (19-117)||(32351461-32351559)
chr8 (19-117)||(32368122-32368220)
[»] scaffold0039 (1 HSPs)
scaffold0039 (22-322)||(46693-46998)
[»] scaffold0142 (1 HSPs)
scaffold0142 (259-337)||(20014-20092)
[»] scaffold0059 (2 HSPs)
scaffold0059 (201-252)||(37594-37645)
scaffold0059 (143-185)||(37527-37569)


Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 340
Target Start/End: Complemental strand, 17297094 - 17296765
Alignment:
Q  11 catcatcaaagttggcataccataaggttgttccctagacagattttgcattgttatgtacctatcatcaagtctagttctaacttgaggatgaggagat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||| ||||||||||||||||||| ||    
T  17297094 catcatcaaagttggcataccataaggttgttccctagacagattttgcatatttatgtacctattatcaagtctaggtctaacttgaggatgaggaaat 17296995  T
Q  111 ataggaacactggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatttctggtcgtgtcattgtagcggttgttgttggagcggtta 210  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17296994 ataggaacactggtagacacgagtacaccagcggtaaatagcggcacaaaggttcccatttctggtcgtgtcattgtagcggttgttgtcggagcggtta 17296895  T
Q  211 ctcccatctccatcaaaaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttg 310  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17296894 ctcccatctccatcaaaaccggcatagccatggttgcccccacgactgttgatacactagcacccactgtaggggcagatgcatgtataaattgtgcttg 17296795  T
Q  311 tgaagaggactgcaatgattgtgatgatgt 340  Q
    ||||||||||||| ||||||||||||||||    
T  17296794 tgaagaggactgcgatgattgtgatgatgt 17296765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 22 - 339
Target Start/End: Complemental strand, 24155056 - 24154728
Alignment:
Q  22 ttggcataccataaggttgttccctagacagattttgcattgttatgtacctatcatcaagtctagttctaacttgaggatgaggagatataggaacact 121  Q
    ||||||||||||||||||||| || | | || |||||||| |||||  ||||||| ||||||||||| |||||||||||||  ||||||||||||| |||    
T  24155056 ttggcataccataaggttgtttcc-ataaaggttttgcatggttataaacctatcgtcaagtctagtcctaacttgaggatagggagatataggaatact 24154958  T
Q  122 ggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatttctggtcgtgtcattgtagcg---gttgttg------ttggag---cggtt 209  Q
     | || ||| || | ||||  ||| ||| | ||||||||||| |||||||||||| |||||| || | |    |||||||      ||| ||   |||||    
T  24154957 agaaggcacaagcataccagtagtgaatggaggcacaaaggtccccatttctggttgtgtcactgcatcaacagttgttgaaacatttgcagaagcggtt 24154858  T
Q  210 actcccatctccatcaaaaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgctt 309  Q
    |||||||| || ||| |||| |||||||||||||||| ||||| ||  ||||| ||| | ||||||||||||| ||||| |||||||||| |||||||||    
T  24154857 actcccatttctatcgaaactggcatagccatggttgtccccatggtagttgaaacattggcacccactgtagtggcaggtgcatgtgtagattgtgctt 24154758  T
Q  310 gtgaagaggactgcaatgattgtgatgatg 339  Q
    ||||||| |||||  | |||||||||||||    
T  24154757 gtgaagaagactgtgacgattgtgatgatg 24154728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 272
Target Start/End: Complemental strand, 242882 - 242662
Alignment:
Q  64 ttatgtacctatcatcaagtctagttctaacttgaggatgaggagatataggaacactggtagacacgagtacaccatcagtaaatagcggcacaaaggt 163  Q
    ||||| ||||||||||||||||||  |||||||||||||||||| | |||||| |||| ||||||||  | || ||| | || ||| | |||||||| ||    
T  242882 ttatgaacctatcatcaagtctagccctaacttgaggatgaggaaagataggatcactagtagacacatggacgccaacggtgaatggaggcacaaaagt 242783  T
Q  164 tcccatttctggtcgtgtcattgtagcggttgttgt------------tggagcggttactcccatctccatcaaaaccggcatagccatggttgccccc 251  Q
     |||||||  ||| ||||||||| ||| |  ||| |            |||||||||||||||||| ||| || ||||  ||||||||||||||||||||    
T  242782 ccccattttgggttgtgtcattggagcagcagttttagaaacagttactggagcggttactcccatatccgtcgaaactagcatagccatggttgccccc 242683  T
Q  252 acggctgttgatacactagca 272  Q
      ||||||||| | |||||||    
T  242682 ttggctgttgacaaactagca 242662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 316
Target Start/End: Original strand, 6038418 - 6038495
Alignment:
Q  239 catggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaaga 316  Q
    |||||||||||||| ||| ||||| ||| | ||||| | ||| ||||||||||| |||||| ||||||||| ||||||    
T  6038418 catggttgcccccatggcagttgacacattggcacctattgtgggggcagatgcctgtgtagattgtgcttatgaaga 6038495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 23011190 - 23011138
Alignment:
Q  201 ggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccac 253  Q
    ||||||||||||| ||| ||| || |||| |||||||||||||||||||||||    
T  23011190 ggagcggttactcgcatgtccctcgaaactggcatagccatggttgcccccac 23011138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 176; Significance: 9e-95; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 31 - 339
Target Start/End: Complemental strand, 29892122 - 29891811
Alignment:
Q  31 cataaggttgttccctagacagattttgcattgttatgtacctatcatcaagtctagttctaacttgaggatgaggagatataggaacactggtagacac 130  Q
    ||||||| | ||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||    
T  29892122 cataaggctattccctagacagactttgcatagttatgtacctatcatcaagtctaggtctaacttgaggatgaggagacgtaggaacactggtagacac 29892023  T
Q  131 gagtacaccatcagtaaatagcggcacaaaggttcccatttctggtcgtgtcattgtagcggttgttgttggagcgg----ttactcccatctccatcaa 226  Q
    | |||||| | |||||||| | ||||||||||||||||||||| ||| ||||||||||| ||||||||| |||||||    |||||||||| | | || |    
T  29892022 gggtacacaagcagtaaatggaggcacaaaggttcccatttcttgtcatgtcattgtagaggttgttgtcggagcggttgattactcccattttcgtcga 29891923  T
Q  227 aaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaat 326  Q
    |||| |||||| ||||||| |||||||| | ||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||| ||||    
T  29891922 aaccagcatagtcatggttacccccacgaccgttgatacactagcacccattgt-ggggcagatgtatgtgtaaattgtgcttgtgaagaggactacaat 29891824  T
Q  327 gattgtgatgatg 339  Q
    |||||||||||||    
T  29891823 gattgtgatgatg 29891811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 195 - 321
Target Start/End: Original strand, 17675974 - 17676100
Alignment:
Q  195 gttgttggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcat 294  Q
    ||||| ||||| ||||||| ||| ||| ||||||   |||||||||||||||| |||||| | |||||||||||||| |||| |||||||| |||||  |    
T  17675974 gttgtaggagcagttactctcatttccgtcaaaatttgcatagccatggttgctcccacgaccgttgatacactagcgcccattgtaggggaagatgtct 17676073  T
Q  295 gtgtaaattgtgcttgtgaagaggact 321  Q
    ||||| |||||||||||||||||||||    
T  17676074 gtgtagattgtgcttgtgaagaggact 17676100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 17675793 - 17675875
Alignment:
Q  19 aagttggcataccataaggttgttccctagacagattttgcattgttatgtacctatcatcaagtctagttctaacttgagga 101  Q
    ||||||| |||||| |||||||||||||||| ||||| ||||| |||||| ||||||||||||||||||  ||||||||||||    
T  17675793 aagttggaataccaaaaggttgttccctagatagattatgcatggttatgaacctatcatcaagtctagccctaacttgagga 17675875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 195 - 291
Target Start/End: Original strand, 17636119 - 17636215
Alignment:
Q  195 gttgttggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtaggggcagatg 291  Q
    ||||| ||||| ||||||||||| ||| |||||||  |||||||||||||||| |||||| | |||||||||||||| |||| |||||||| |||||    
T  17636119 gttgtaggagcagttactcccatttccgtcaaaacttgcatagccatggttgctcccacgaccgttgatacactagcgcccattgtaggggaagatg 17636215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 17635938 - 17636020
Alignment:
Q  19 aagttggcataccataaggttgttccctagacagattttgcattgttatgtacctatcatcaagtctagttctaacttgagga 101  Q
    ||||||| |||||| |||||||||||||||| ||||| ||| | |||||| ||||||||||||||||||  ||||||||||||    
T  17635938 aagttggaataccaaaaggttgttccctagatagattatgcgtggttatgaacctatcatcaagtctagccctaacttgagga 17636020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 338
Target Start/End: Complemental strand, 17162671 - 17162556
Alignment:
Q  223 tcaaaaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactg 322  Q
    ||||||| ||| | |||||||||||| ||| ||| ||||| ||| | ||| ||||||||||||||||||| ||| |  |||||||||||||||| |||||    
T  17162671 tcaaaactggctttgccatggttgcctccatggcagttgacacattggcatccactgtaggggcagatgcctgtatggattgtgcttgtgaagaagactg 17162572  T
Q  323 caatgattgtgatgat 338  Q
      |||||| |||||||    
T  17162571 tgatgattatgatgat 17162556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 23802770 - 23802822
Alignment:
Q  201 ggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccac 253  Q
    |||| |||||||||||| ||| || |||| |||||||||||||||||||||||    
T  23802770 ggagtggttactcccatttccgtcgaaactggcatagccatggttgcccccac 23802822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 23777228 - 23777279
Alignment:
Q  135 acaccatcagtaaatagcggcacaaaggttcccatttctggtcgtgtcattg 186  Q
    |||||| |||||||| | ||||||||||||||||||| | ||||||||||||    
T  23777228 acaccagcagtaaatgggggcacaaaggttcccattttttgtcgtgtcattg 23777279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 22800842 - 22800879
Alignment:
Q  9 gacatcatcaaagttggcataccataaggttgttccct 46  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  22800842 gacatcatcaaagttggcataccatacggtttttccct 22800879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 71 - 337
Target Start/End: Complemental strand, 19218947 - 19218681
Alignment:
Q  71 cctatcatcaagtctagttctaacttgaggatgaggagatataggaacactggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatt 170  Q
    ||||||||||| |||||  ||||||||||| | ||||||  |||| ||||| ||||||||| |||||||| |||||||| | |||||||| || || |||    
T  19218947 cctatcatcaaatctagccctaacttgagggttaggagaagtagggacacttgtagacacgggtacaccagcagtaaatggtggcacaaatgtccctatt 19218848  T
Q  171 tctggtcgtgtcattgtagcggttgttgttggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccacggctgttgatacactag 270  Q
    | |||| ||||||||| |||||||   || ||||||||||||||||| ||| || ||||||||||  |||||||| |||||||||| |||||||||||||    
T  19218847 tatggttgtgtcattggagcggttacagtcggagcggttactcccatttccttcgaaaccggcatgaccatggttacccccacggccgttgatacactag 19218748  T
Q  271 cacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaatgattgtgatga 337  Q
    ||| ||||| |||||| |||||   ||||| |||||||||||||||||| |||| ||||||||||||    
T  19218747 cactcactgcaggggcggatgcccttgtaatttgtgcttgtgaagaggattgcagtgattgtgatga 19218681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 83 - 337
Target Start/End: Original strand, 20059948 - 20060201
Alignment:
Q  83 tctagttctaacttgaggatgaggagatataggaacactggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatttctggtcgtgtc 182  Q
    |||||| || |||||||| | ||||||  |||| ||||| |||||||||||||||||| |||||||| | ||||| ||||| |||||||||||| |||||    
T  20059948 tctagtactcacttgagggttaggagaagtagggacacttgtagacacgagtacaccaacagtaaatggtggcacgaaggtccccatttctggttgtgtc 20060047  T
Q  183 attgtagcggttgttgttggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtag 282  Q
    |||   || ||| | ||||||| |||||||||||| ||| || ||| || | |||||||||||||||||| ||| |||| |||||| ||||||| || ||    
T  20060048 atttgggcagttatagttggagtggttactcccatgtccgtcgaaatcgac-tagccatggttgcccccaaggccgttggtacacttgcacccaatgcag 20060146  T
Q  283 gggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaatgattgtgatga 337  Q
    |||  ||||  ||||| | |||||||||||||||||| |||||||||||||||||    
T  20060147 gggtggatgtttgtgtgatttgtgcttgtgaagaggattgcaatgattgtgatga 20060201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 223 - 322
Target Start/End: Original strand, 21381499 - 21381598
Alignment:
Q  223 tcaaaaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactg 322  Q
    ||||||| |||||||||||||||||||||| ||  ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21381499 tcaaaactggcatagccatggttgcccccatggtcgttgatacactagcatccactgtaggggcagatgcatgtgtagattgtgcttgtgaagaggactg 21381598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 337
Target Start/End: Complemental strand, 20059680 - 20059403
Alignment:
Q  71 cctatcatcaagtctagttctaacttgaggatgaggagatataggaacactggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatt 170  Q
    ||||||||||| |||||| || ||||||   | ||||||  |||| ||||| ||||||||| |||||||| |||||||| | ||||| ||||| | ||||    
T  20059680 cctatcatcaaatctagtcctcacttgaaagttaggagaagtagggacactcgtagacacgggtacaccagcagtaaatggtggcacgaaggtcctcatt 20059581  T
Q  171 tctggtcgtgtcattgtagcggtt------------gttgttggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccacggctg 258  Q
    |||| | ||||||||   ||||||            ||||| ||||||||||||||||| ||| || ||| || | | |||||||||||||||| ||| |    
T  20059580 tctgattgtgtcatttgggcggttacagtcggagcggttgtgggagcggttactcccatgtccgtcgaaatcgac-tggccatggttgcccccaaggccg 20059482  T
Q  259 ttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaatgattgtgatga 337  Q
    ||| |||||| |||||||||| |||||  ||||  ||||| | || ||||||||||||||| |||||||||||||||||    
T  20059481 ttggtacacttgcacccactgcaggggtggatgtttgtgtgatttatgcttgtgaagaggattgcaatgattgtgatga 20059403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 21381307 - 21381470
Alignment:
Q  19 aagttggcataccataaggttgttccctagacagattttgcattgttatgtacctatcatcaagtctagttctaacttgaggatgaggagatataggaac 118  Q
    ||||| |||||||||||| ||| |||||||| || || ||||| |||||| |||||||||||| || |   |||||| |||| | |||||||  || ||     
T  21381307 aagttagcataccataagtttgatccctagagaggttctgcatggttatgaacctatcatcaaatccaaccctaactagagggtaaggagatgcagaaaa 21381406  T
Q  119 actggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatttctggtcgtgtca 183  Q
    ||| ||||||||| ||||||||  ||||||| | ||| |||| ||||||||||||||| ||||||    
T  21381407 actagtagacacgggtacaccagtagtaaatggaggc-caaaagttcccatttctggttgtgtca 21381470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 337
Target Start/End: Complemental strand, 26129459 - 26129323
Alignment:
Q  201 ggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgtaa 300  Q
    ||||||||||||||||| |   ||  ||||||||| ||||||||| |||||||||  || |||||||||||||| | || |||||| ||||   ||||||    
T  26129459 ggagcggttactcccatttttgtcgtaaccggcatggccatggttacccccacggtcgtcgatacactagcacctagtgcaggggcggatgtccgtgtaa 26129360  T
Q  301 attgtgcttgtgaagaggactgcaatgattgtgatga 337  Q
     || |||||||||||||||   | |||||||||||||    
T  26129359 tttttgcttgtgaagaggataacgatgattgtgatga 26129323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 9e-55; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 11 - 312
Target Start/End: Original strand, 20865445 - 20865758
Alignment:
Q  11 catcatcaaagttggcataccataaggttgttccctagacagattttgcattgttatgtacctatcatcaagtctagttctaacttgaggatgaggagat 110  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||| ||| |||| ||||||||||||||||||||  ||||||||||||||||| ||     
T  20865445 catcatcaaagttggcataccataaggttgttctctagacagacttttcatcgttacgtacctatcatcaagtctaggactaacttgaggatgaggggac 20865544  T
Q  111 ataggaacactggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatttctggtcgtgtcattgtagcggttgttgttggagcg---- 206  Q
     |||||||||||||||||||   |||| || | |||||| | ||||||||||||||||||| ||||||| |||||| |   |||||||| ||||||        
T  20865545 gtaggaacactggtagacacatatacaacagccgtaaatggaggcacaaaggttcccatttttggtcgtttcattgcaatagttgttgtcggagcggttg 20865644  T
Q  207 --------gttactcccatctccatcaaaaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgt 298  Q
            ||||||||||| ||| |||||||||||||   |||||||||  ||||| |  |||||||||||||| |||||   ||||||||||| | |||    
T  20865645 tggaagcagttactcccatatccgtcaaaaccggcatgatcatggttgcgtccacgtccattgatacactagcagccactaatggggcagatgcctatgt 20865744  T
Q  299 aaattgtgcttgtg 312  Q
    ||||||||||||||    
T  20865745 aaattgtgcttgtg 20865758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 71 - 337
Target Start/End: Complemental strand, 22608753 - 22608476
Alignment:
Q  71 cctatcatcaagtctagttctaacttgaggatgaggagatataggaacactggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatt 170  Q
    ||||||||||| |||||  ||||||||||| | ||||||   ||| | ||| ||||||||| |||||||| | |||||| | | || ||||||  |||||    
T  22608753 cctatcatcaaatctagccctaacttgagggttaggagagtcagggatacttgtagacacgggtacaccaacggtaaatggtgacagaaaggtcaccatt 22608654  T
Q  171 tctggtcgtgtcattgtagcggttgttgttggagcggtta-----------ctcccatctccatcaaaaccggcatagccatggttgcccccacggctgt 259  Q
    ||| || | |||  |||||||||| | |||||||||||||           |||| || ||| || |||| ||||| |||||||||||||||| ||   |    
T  22608653 tctagttgcgtccatgtagcggttatagttggagcggttatggaatcggtactcctatttccgtcgaaactggcatggccatggttgcccccatggtctt 22608554  T
Q  260 tgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaatgattgtgatga 337  Q
    |||||||||||||||||||    |||| |||||   |||||||||||||||||||||||| |  ||||||||| ||||    
T  22608553 tgatacactagcacccactaacagggcggatgcccatgtaaattgtgcttgtgaagaggattataatgattgtaatga 22608476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 316
Target Start/End: Original strand, 13963902 - 13964016
Alignment:
Q  201 ggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgtaa 300  Q
    ||||||||||||| ||| || |||||||| ||||| | ||||||| |||| | | | ||||| ||| | ||| ||||| ||||||||||||| ||||| |    
T  13963902 ggagcggttactcacatttctatcaaaactggcattgacatggttacccc-atgacagttgacacattggcaaccactataggggcagatgcctgtgtga 13964000  T
Q  301 attgtgcttgtgaaga 316  Q
    ||||||||||||||||    
T  13964001 attgtgcttgtgaaga 13964016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 10159701 - 10159652
Alignment:
Q  12 atcatcaaagttggcataccataaggttgttccctagacagattttgcat 61  Q
    |||||| ||||||||||||||||  ||||||||||||| ||||| |||||    
T  10159701 atcatcgaagttggcataccatacagttgttccctagaaagattctgcat 10159652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 13963693 - 13963722
Alignment:
Q  19 aagttggcataccataaggttgttccctag 48  Q
    ||||||||||||||||||||||||||||||    
T  13963693 aagttggcataccataaggttgttccctag 13963722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 71 - 337
Target Start/End: Original strand, 2546133 - 2546399
Alignment:
Q  71 cctatcatcaagtctagttctaacttgaggatgaggagatataggaacactggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatt 170  Q
    ||||||||||| |||||  ||||||| ||| | ||||||   ||| ||||| ||||||||  |||||||| |||||||||| ||||||||||| ||||||    
T  2546133 cctatcatcaaatctagccctaacttaagggttaggagaagaagggacacttgtagacacatgtacaccagcagtaaatagtggcacaaaggtccccatt 2546232  T
Q  171 tctggtcgtgtcattgtagcggttgttgttggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccacggctgttgatacactag 270  Q
    ||| || ||||||||  |||||||   || ||||||||||||||||| ||| || |||| |||||  | ||||||||||||||||  || ||||||||||    
T  2546233 tctagttgtgtcatttgagcggttacagtcggagcggttactcccatttccgtcgaaactggcatgacaatggttgcccccacggtcgtcgatacactag 2546332  T
Q  271 cacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaatgattgtgatga 337  Q
    ||||||||  |||||| |||||   ||||  |||||||| ||||||||| ||| |||||||||||||    
T  2546333 cacccacttaaggggcggatgcccatgtattttgtgcttttgaagaggattgcgatgattgtgatga 2546399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 145 - 337
Target Start/End: Original strand, 18083654 - 18083838
Alignment:
Q  145 taaatagcggcacaaaggttcccatttctggtcgtgtcattgtagcggttgttgttggagcggttactcccatctccatcaaaaccggcatagccatggt 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||| |    |||||||||||| || ||| || |||||||||| ||          
T  18083654 taaatagaggcacaaaggttcccatttctggtcgtgtcattgcagcggttgtgga---agcggttactcctatttccgtcgaaaccggcatggcagc--- 18083747  T
Q  245 tgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaatgattgtgatga 337  Q
      |||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||    
T  18083748 --cccccacggccgttgatacactagtacccattgtaggggcagatgcctgtgtaaattgtggttgtgaagaggattgcaatgattgtgatga 18083838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 71 - 337
Target Start/End: Complemental strand, 14988173 - 14987895
Alignment:
Q  71 cctatcatcaagtctagttctaacttgaggatgaggagatataggaacactggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatt 170  Q
    ||||||||||| | | || ||||||||||| | | ||||  |||| ||||| ||||||||| ||||||||  ||||||| | |||||||||||| |||||    
T  14988173 cctatcatcaaatatggtcctaacttgagggttaagagaagtagggacactagtagacacgggtacaccaatagtaaatggtggcacaaaggtttccatt 14988074  T
Q  171 tctggtcgtgtcattgtagcggtt------------gttgttggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccacggctg 258  Q
    |||||| ||||||||  || ||||            ||||| ||| | |||| |||||| ||| ||||||||||||| |||||||||||||||||| | |    
T  14988073 tctggtggtgtcatttgagtggttacagtcggagcggttgtgggaacagttattcccatttccgtcaaaaccggcatggccatggttgcccccacgaccg 14987974  T
Q  259 ttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaatgattgtgatga 337  Q
    | |||||||||||||||| || |||||| ||||| ||| ||| |||| ||||||||||||| ||  |||||||||||||    
T  14987973 tcgatacactagcacccattgcaggggcggatgcctgtataatttgtacttgtgaagaggattgtgatgattgtgatga 14987895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 71 - 337
Target Start/End: Complemental strand, 15417784 - 15417506
Alignment:
Q  71 cctatcatcaagtctagttctaacttgaggatgaggagatataggaacactggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatt 170  Q
    ||||||||||| | | || ||||||||||| | | ||||  |||| ||||| ||||||||| ||||||||  ||||||| | |||||||||||| |||||    
T  15417784 cctatcatcaaatatggtcctaacttgagggttaagagaagtagggacactagtagacacgggtacaccaatagtaaatggtggcacaaaggtttccatt 15417685  T
Q  171 tctggtcgtgtcattgtagcggtt------------gttgttggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccacggctg 258  Q
    |||||| ||||||||  || ||||            ||||| ||| | |||| |||||| ||| ||||||||||||| |||||||||||||||||| | |    
T  15417684 tctggtggtgtcatttgagtggttacagtcggagcggttgtgggaacagttattcccatttccgtcaaaaccggcatggccatggttgcccccacgaccg 15417585  T
Q  259 ttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaatgattgtgatga 337  Q
    | |||||||||||||||| || |||||| ||||| ||| ||| |||| ||||||||||||| ||  |||||||||||||    
T  15417584 tcgatacactagcacccattgcaggggcggatgcctgtataatttgtacttgtgaagaggattgtgatgattgtgatga 15417506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 335
Target Start/End: Complemental strand, 7948664 - 7948555
Alignment:
Q  226 aaaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaa 325  Q
    |||| ||||| |||||| ||||||||| ||| || ||| || |  |||  ||||||||||||||||| |||||  |||||||||||||||| |||||  |    
T  7948664 aaactggcattgccatgattgcccccatggcagtcgatgcattgacacatactgtaggggcagatgcctgtgtggattgtgcttgtgaagaagactgtga 7948565  T
Q  326 tgattgtgat 335  Q
    ||||||||||    
T  7948564 tgattgtgat 7948555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 18099185 - 18099147
Alignment:
Q  11 catcatcaaagttggcataccataaggttgttccctaga 49  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  18099185 catcatcgaagttggcataccatacggttgttccctaga 18099147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2096 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold2096
Description:

Target: scaffold2096; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 71 - 337
Target Start/End: Original strand, 371 - 648
Alignment:
Q  71 cctatcatcaagtctagttctaacttgaggatgaggagatataggaacactggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatt 170  Q
    ||||||||||| |||||| ||||||||||| | ||||||  || | ||||| ||||| |||  ||||||| |||||||| | ||||||||||| ||||||    
T  371 cctatcatcaaatctagtcctaacttgagggttaggagaagtatggacacttgtagaaacggctacaccagcagtaaatggtggcacaaaggtccccatt 470  T
Q  171 tctggtcgtgtcattgtagcggtt-----------gttgttggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccacggctgt 259  Q
    |||||| ||||||||  |||| ||           ||||| ||||||||||||||||| ||| || |||||||||| |||||||||||||||| |||       
T  471 tctggttgtgtcatttgagcgattaaattggagcagttgtgggagcggttactcccatttccgtcgaaaccggcatggccatggttgcccccaaggccac 570  T
Q  260 tgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaatgattgtgatga 337  Q
    || |||||| ||| ||||||||||| |  |||   |||||| |||||||||||||||||| | |||||||| ||||||    
T  571 tggtacacttgcatccactgtagggccgaatgttcgtgtaatttgtgcttgtgaagaggattacaatgattatgatga 648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 337
Target Start/End: Complemental strand, 29615633 - 29615372
Alignment:
Q  75 tcatcaagtctagttctaacttgaggatgaggagatataggaacactggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatttctg 174  Q
    ||||||| | |||| || |||||||| | |||| |  |||| ||||| ||||||||| |||||||| |||||| | |  |||| | ||| ||||||||||    
T  29615633 tcatcaaatatagtcctcacttgagggttaggaaaagtagggacacttgtagacacgggtacaccagcagtaagtggttgcacgatggtccccatttctg 29615534  T
Q  175 gtcgtgtcattgtagcggttgttgttggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccacggctgttgatacactagcacc 274  Q
    || ||||||||   | ||||   |||||||||||||||| ||| |||||| |||||||||  |||||||||||||||| || | ||| |||||| ||| |    
T  29615533 gttgtgtcatttgggtggttacagttggagcggttactctcatttccatcgaaaccggcagggccatggttgcccccaagg-tcttggtacacttgcatc 29615435  T
Q  275 cactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaatgattgtgatga 337  Q
    ||||| |||||  ||||  ||||| | |||||||||||||||||| ||| || ||||||||||    
T  29615434 cactgcaggggtggatgtttgtgtgatttgtgcttgtgaagaggattgcgataattgtgatga 29615372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 22927892 - 22927945
Alignment:
Q  201 ggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccacg 254  Q
    ||||||||||||||||| ||| |  |||| ||||||||||||||||||||||||    
T  22927892 ggagcggttactcccatttccgttgaaactggcatagccatggttgcccccacg 22927945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 4025663 - 4025634
Alignment:
Q  19 aagttggcataccataaggttgttccctag 48  Q
    ||||||||||||||||||||||||||||||    
T  4025663 aagttggcataccataaggttgttccctag 4025634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 4025377 - 4025341
Alignment:
Q  280 taggggcagatgcatgtgtaaattgtgcttgtgaaga 316  Q
    |||||||||||||||||||  ||||||||||||||||    
T  4025377 taggggcagatgcatgtgtggattgtgcttgtgaaga 4025341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 239 - 328
Target Start/End: Original strand, 14739 - 14828
Alignment:
Q  239 catggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaatga 328  Q
    |||||||||||||||| | ||||||| ||||||||||| ||||||||  |||||  ||||||||||||||||||||||||| ||| ||||    
T  14739 catggttgcccccacgaccgttgatatactagcacccattgtaggggtggatgcccgtgtaaattgtgcttgtgaagaggattgcgatga 14828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 261 - 319
Target Start/End: Complemental strand, 27124285 - 27124227
Alignment:
Q  261 gatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagagga 319  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||    
T  27124285 gatacactagcacccactgtaggggcagatgcctgtgtaaattatgcatgtgaagagga 27124227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 23354973 - 23355029
Alignment:
Q  280 taggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaatgattgtgatg 336  Q
    ||||||||||||| |||||| |||||||||||||||| |||||  ||||||||||||    
T  23354973 taggggcagatgcttgtgtagattgtgcttgtgaagaagactgtgatgattgtgatg 23355029  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 32351461 - 32351559
Alignment:
Q  19 aagttggcataccataaggttgttccctagacagattttgcattgttatgtacctatcatcaagtctagttctaacttgaggatgaggagatataggaa 117  Q
    ||||||||||| ||||||||||||||||||  |  |||||||| | |||  |||||||||| |  ||||  | |||||||||||||||||| |||||||    
T  32351461 aagttggcatagcataaggttgttccctagtgaagttttgcatggctataaacctatcatctaacctagcccaaacttgaggatgaggagacataggaa 32351559  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 32368122 - 32368220
Alignment:
Q  19 aagttggcataccataaggttgttccctagacagattttgcattgttatgtacctatcatcaagtctagttctaacttgaggatgaggagatataggaa 117  Q
    ||||||||||| ||||||||||||||||||  |  |||||||| | |||  |||||||||| |  ||||  | |||||||||||||||||| |||||||    
T  32368122 aagttggcatagcataaggttgttccctagtgaagttttgcatggctataaacctatcatctaacctagcccaaacttgaggatgaggagacataggaa 32368220  T

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Target: scaffold0039 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 322
Target Start/End: Complemental strand, 46998 - 46693
Alignment:
Q  22 ttggcataccataaggttgttccctagacagattttgcattgttatgtacctatcatcaagtctagttctaacttgaggatgaggagatataggaacact 121  Q
    ||||||||| | ||||||||| |||||| ||||||||||| |||||| |||| ||||||||  |||  ||||||||||||      || | |||||| ||    
T  46998 ttggcatacaaaaaggttgtttcctagatagattttgcatggttatgaacctgtcatcaagaataggcctaacttgagga------gagacaggaacgct 46905  T
Q  122 ggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatttctggtcgtgtca------------ttgtagcggttgttgttggagcggtt 209  Q
    |||||||||  ||| |||| || ||||| | ||||||||||| | |||||||||| ||||||            |||| |  || ||||| ||||| |||    
T  46904 ggtagacacatgtataccagcaataaatggaggcacaaaggt-ctcatttctggttgtgtcactacaacaacagttgtcggagtggttgtgggagcagtt 46806  T
Q  210 actcccatctccatcaaaaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgctt 309  Q
    || | ||| ||| || |||  ||||||   |||||||| |||||| |||||||||||| |||||||||| ||||||||||||| |||||| | || ||||    
T  46805 acccacatttccttcgaaattggcataattatggttgctcccacgactgttgatacaccagcacccactataggggcagatgcctgtgtagaatgggctt 46706  T
Q  310 gtgaagaggactg 322  Q
    | ||||| |||||    
T  46705 gcgaagaagactg 46693  T

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Target: scaffold0142 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 337
Target Start/End: Original strand, 20014 - 20092
Alignment:
Q  259 ttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaatgattgtgatga 337  Q
    |||||||||||||||||  || | ||  |||||| |||||||||||||||||||||||||| ||| |||||||||||||    
T  20014 ttgatacactagcaccccttgaaaggatagatgcctgtgtaaattgtgcttgtgaagaggattgcgatgattgtgatga 20092  T

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Target: scaffold0059 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 37594 - 37645
Alignment:
Q  201 ggagcggttactcccatctccatcaaaaccggcatagccatggttgccccca 252  Q
    ||||||||||||||| | ||| ||||||| |||||||| |||||||||||||    
T  37594 ggagcggttactcccgtttccgtcaaaactggcatagcaatggttgccccca 37645  T

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Target: scaffold0059; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 37527 - 37569
Alignment:
Q  143 agtaaatagcggcacaaaggttcccatttctggtcgtgtcatt 185  Q
    ||||||| | ||||||||||||||||||| |||||||||||||    
T  37527 agtaaatgggggcacaaaggttcccatttatggtcgtgtcatt 37569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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