View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6395_high_14 (Length: 251)
Name: NF6395_high_14
Description: NF6395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6395_high_14 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 51807692 - 51807455
Alignment:
| Q |
1 |
ctatcagccttcctagcaagtcttttcttgttcgaatttgttaaacctgaaacaataaagcactctatatatgttggtaaaaccatcaatacttagcgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
51807692 |
ctatcagccttcctagcaagtcttttcttgttcgaatttgttaaacctgaaacaataaagcactctat----gttggtaaaaccatcaatacttagcgaa |
51807597 |
T |
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| Q |
101 |
atttgatattcatgattcgtctgtcgtcaaggaaaagaaagtcttacttttgctttgatgcttggatggatattggcattgatgagaggcagaaccaagt |
200 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51807596 |
atttgatattcatgattcatctgtc---aaggaaaagaaagtcttacttttgctttgatgcttggatggatattggcattgatgagaggcagaaccaagt |
51807500 |
T |
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| Q |
201 |
aagtatctgttaatcgaattttgaaactgatgatatattattgga |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
51807499 |
aagtatctgttaatcgaattttgaaactgatgatatatgattgga |
51807455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 231
Target Start/End: Complemental strand, 51779980 - 51779766
Alignment:
| Q |
13 |
ctagcaagtcttttcttgttcgaatttgttaaacctgaaacaataaagcactctatatatgttggtaaaaccatcaatacttagcgaaatttgatattca |
112 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||| ||| |||| |
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| T |
51779980 |
ctagcaagccttttcttgtttgaatttgttaaacctgaaacaataaagcactctatat----tggtaaaacattcaatacctagcgaaattagatgttca |
51779885 |
T |
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| Q |
113 |
tgattcgtctgtcgtcaaggaaaagaaagtcttacttttgctttgatgcttggatggatattggcattgatgagaggcagaaccaagtaagtatctgtta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||| ||||||||| |
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| T |
51779884 |
tgattcgtctgtcgtcaaggaaaagaaagtcttacttttgctttgatgtttggatggatattgacattgatgagaggcagaatcaagtatgtatctgttt |
51779785 |
T |
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| Q |
213 |
atcgaattttgaaactgat |
231 |
Q |
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|||||| |||||||||||| |
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| T |
51779784 |
atcgaactttgaaactgat |
51779766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 51772111 - 51771879
Alignment:
| Q |
1 |
ctatcagccttcctagcaagtcttttcttgttcgaatttgttaaacctgaaacaataaa--gcactctatatatgttggtaaaaccatcaatacttagcg |
98 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | || |
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| T |
51772111 |
ctatcagcctttctagcaagccttttcttgttcgaatttgttaaacctgaaacaataaaaagcactctatat----tggtaaaaccatcaatacagatcg |
51772016 |
T |
|
| Q |
99 |
aaatttgatattcatgattcgtctgtcgtcaaggaaaagaaagtcttacttttgctttgatgcttggatggatattggcattgatgagaggcagaaccaa |
198 |
Q |
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| | |||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||| ||| |
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| T |
51772015 |
a-------ttttcatgattcgtctgta---aaggaaatgaaagtcttacttttgctttgatgtttggatggatattgacattgatgagaggtagaatcaa |
51771926 |
T |
|
| Q |
199 |
gtaagtatctgttaatcgaattttgaaactgatgatatattattgga |
245 |
Q |
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||||||||||||||| |||||||| ||||||| | |||| |||||| |
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| T |
51771925 |
gtaagtatctgttaacggaattttggaactgatcaaatatgattgga |
51771879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 51803689 - 51803593
Alignment:
| Q |
130 |
aggaaaagaaagtcttacttttgctttgatgcttggatggatattggcattgatgagaggcagaaccaagtaagtatctgttaatcgaattttgaaa |
226 |
Q |
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||||||| ||||| ||||||||| |||| || |||| || | ||| |||||||||| ||||||| |||||||||||||||||| || |||||||| |
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| T |
51803689 |
aggaaaataaagttttacttttgttttgttgtttggttgaaagttgacattgatgagtggcagaatcaagtaagtatctgttaactgatttttgaaa |
51803593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 13 - 231
Target Start/End: Complemental strand, 6622 - 6408
Alignment:
| Q |
13 |
ctagcaagtcttttcttgttcgaatttgttaaacctgaaacaataaagcactctatatatgttggtaaaaccatcaatacttagcgaaatttgatattca |
112 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||| |
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| T |
6622 |
ctagcaagccttttcttgtttgaatttgttaaacctgaaacaataaagcactctatat----tggtaaaacattcaatacctagcgaaatttgatattca |
6527 |
T |
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| Q |
113 |
tgattcgtctgtcgtcaaggaaaagaaagtcttacttttgctttgatgcttggatggatattggcattgatgagaggcagaaccaagtaagtatctgtta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||| |||||||||| |
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| T |
6526 |
tgattcgtctgtcgtcaaggaaaagaaagtcttacttttgctttgatgtttggatggatattgacattgatgagaggcagaatcaagtatgtatctgtta |
6427 |
T |
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| Q |
213 |
atcgaattttgaaactgat |
231 |
Q |
| |
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||||||||||||||||||| |
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| T |
6426 |
atcgaattttgaaactgat |
6408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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