View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6395_high_16 (Length: 239)
Name: NF6395_high_16
Description: NF6395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6395_high_16 |
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| [»] chr1 (5 HSPs) |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 51807991 - 51807773
Alignment:
| Q |
15 |
ctgtcacactaaaatattgcgtaaacactttctccactccacccatttgaagaatttgagcccctaagctcaaagtcctctttattgttttagatatgtt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
51807991 |
ctgtcacactaaaatattgcgtaaacactttctccactccacccatttgaagaatttgagcccctaagctcaaagttctctttattgttttagatatgtt |
51807892 |
T |
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| Q |
115 |
tgctccaactctcactgaaatttttcagagttatgcaaatagaattagatacgcgcaactcaactagcaactgcaagaggagttaagctgatatagatac |
214 |
Q |
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| T |
51807891 |
tgctccaactctcactgaaatttttcagagttatgcaaatagaattagatatgcgcaactcaacta------gcaagaggagtaaagctgatatagatac |
51807798 |
T |
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| Q |
215 |
tacacagaaatggaaaatggttttc |
239 |
Q |
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| T |
51807797 |
tacacagaaatggaaaatggttttc |
51807773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 51804035 - 51803887
Alignment:
| Q |
18 |
tcacactaaaatattgcgtaaacactttctccactccacccatttgaagaatttgagcccctaagctcaaagtcctctttattgttttagatatgtttgc |
117 |
Q |
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||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
51804035 |
tcacactaaaatactgcctaaacattttctccactccacccatttgaagaatttgagcccctaagttcaacgtcctctttattgttttagatatgtttgc |
51803936 |
T |
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| Q |
118 |
tccaactctcactgaaatttttcagagttatgcaaatagaattagatac |
166 |
Q |
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| T |
51803935 |
tcccgatctcactgaaatttttcagagttatataaagagaattagatac |
51803887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 51772413 - 51772294
Alignment:
| Q |
18 |
tcacactaaaatattgcgtaaacactttctccactccacccatttgaagaatttgagcccctaagctcaaagtcctctttattgttttagatatgtttgc |
117 |
Q |
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||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| ||||||| ||| |||||||| |
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| T |
51772413 |
tcacactaaaataccgcataaacactttctccactccacccacttgaagaatttgagcccctaagctcaattttctcttaattgtttcagaaatgtttgc |
51772314 |
T |
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| Q |
118 |
tccaactctcactgaaattt |
137 |
Q |
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|| || ||| |||||||||| |
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| T |
51772313 |
tctaagtcttactgaaattt |
51772294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 51780279 - 51780160
Alignment:
| Q |
18 |
tcacactaaaatattgcgtaaacactttctccactccacccatttgaagaatttgagcccctaagctcaaagtcctctttattgttttagatatgtttgc |
117 |
Q |
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||||||||||||| ||| |||| | ||| ||||||||||||| || |||||||| ||||||||||||||| ||||| ||||||||| ||| |||||||| |
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| T |
51780279 |
tcacactaaaatagtgcataaaaaatttatccactccacccacttaaagaattttagcccctaagctcaacttcctccttattgtttcagaaatgtttgc |
51780180 |
T |
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| Q |
118 |
tccaactctcactgaaattt |
137 |
Q |
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||| | ||| | |||||||| |
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| T |
51780179 |
tcccagtcttaatgaaattt |
51780160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 139
Target Start/End: Complemental strand, 51761406 - 51761302
Alignment:
| Q |
36 |
taaacactttctccactccacccatttgaagaatttgagcccc-taagctcaaagtcctctttattgttttagatatgtttgctccaactctcactgaaa |
134 |
Q |
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|||||| |||||||||| |||||| || ||||||| ||||||| | || || ||||||||||||||| ||||||||| |||| ||||||||||||| |
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| T |
51761406 |
taaacattttctccacttcacccacttcaagaattcgagccccctgtacttaacttcctctttattgtttctgatatgttttctcccactctcactgaaa |
51761307 |
T |
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| Q |
135 |
ttttt |
139 |
Q |
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||||| |
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| T |
51761306 |
ttttt |
51761302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 6921 - 6802
Alignment:
| Q |
18 |
tcacactaaaatattgcgtaaacactttctccactccacccatttgaagaatttgagcccctaagctcaaagtcctctttattgttttagatatgtttgc |
117 |
Q |
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||||||||||||| ||| |||| | ||| ||||||||||||| || |||||||| ||||||||||||||| ||||| ||||||||| ||| |||||||| |
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| T |
6921 |
tcacactaaaatagtgcataaaaaatttatccactccacccacttaaagaattttagcccctaagctcaacttcctccttattgtttcagaaatgtttgc |
6822 |
T |
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| Q |
118 |
tccaactctcactgaaattt |
137 |
Q |
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||| | ||| | |||||||| |
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| T |
6821 |
tcccagtcttaatgaaattt |
6802 |
T |
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