View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6395_high_3 (Length: 655)
Name: NF6395_high_3
Description: NF6395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6395_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 538; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 639
Target Start/End: Original strand, 42543115 - 42543760
Alignment:
| Q |
1 |
aataccccaattcgtaaaggaatgaaaaacggataaaagatataatgattaagctaaaattgagtaatcgacctccttcaactccactttatgatgccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42543115 |
aataccccaattcgtaaaggaatgaaaaacggataaaagatataatgattaagctaaaattgagtaatcgacctccttcaactccactttatgatgccaa |
42543214 |
T |
|
| Q |
101 |
at-aatccaaatgacagtataagcaagagaaattacattaaaagtatcaaccggtaaaaaagacatgccacactttttctctgtaatccaaggagtgttt |
199 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42543215 |
attaatccaaatgacagtataagcaagagaaattacattaaaagtatcaatcggtaaaaaagacatgccacactttttctctgtaatccaaggaatgttt |
42543314 |
T |
|
| Q |
200 |
gcagccagtaaaagctctcacatacagacactcatacattcttaaccacttcttctattaattggatcatgcttaaatattacaagttgaacataacaat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42543315 |
gcagccagtaaaagctctcacatacagacactcatacattcttaaccacttcttctattaattggatcatgcttaaatattacaagttgaacataacaat |
42543414 |
T |
|
| Q |
300 |
cttcagctattaattgatcaaaaatcaaactccttaacacacaatcttgtcactagaaaccactgaactcatagcaatagtaaaaacacagtgaaagcca |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42543415 |
cttcagctattaattgatcaaaaatcaaactccttaacacacaatcttgtcactagaaaccactgaactcatagcaatagtaaaaacacagtgaaagcca |
42543514 |
T |
|
| Q |
400 |
ataattcagtttaaaaattatatttttgcaattctattaaacactccatcatcacacaaacaacaaaaaacctaatttgatgt-nnnnnnncaaacaaag |
498 |
Q |
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| T |
42543515 |
aaaattcagtttaaaaattatatttttgcaattctattaaacactccatcatcacacaaacaacaaaaaacctaatttgatgtaaaaaaaacaaacaaag |
42543614 |
T |
|
| Q |
499 |
ttagcagaaagaaacttactttgaagctgtttgtccatgtacctatcgaaaccccaaattaaacgaag-----nnnnnnnnngcatattagtattgatca |
593 |
Q |
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| T |
42543615 |
ttagcagaaagaaacttactttgaagctgtttgtccatgtacctatcgaaaccccaaattaaaagaagaagaaaaaaaaaaaacatattagtattgatca |
42543714 |
T |
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| Q |
594 |
agtgtagtagaaattcaaaatcgacaaaaaattgtaatgataaaac |
639 |
Q |
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| T |
42543715 |
agtgtagtagaaattcaaaatcgacaaaaaatagtaatgataaaac |
42543760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 42543008 - 42543106
Alignment:
| Q |
5 |
ccccaattcgtaaaggaatgaaaaacggataaaagatataatgattaagctaaaattgagtaatcgacctccttcaactccactttatgatgccaaataa |
104 |
Q |
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||||||||| || |||||| |||||||||||||| ||| |||||||||||||||||||||||| ||| ||||| |||| |||||||||||||||||||| |
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| T |
42543008 |
ccccaattcatagaggaataaaaaacggataaaaaata--atgattaagctaaaattgagtaattgacttccttgaacttcactttatgatgccaaataa |
42543105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 542
Target Start/End: Complemental strand, 24625544 - 24625508
Alignment:
| Q |
506 |
aaagaaacttactttgaagctgtttgtccatgtacct |
542 |
Q |
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| T |
24625544 |
aaagaaacttactctgaagctgtttgtccatgtacct |
24625508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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