View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6395_high_7 (Length: 419)
Name: NF6395_high_7
Description: NF6395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6395_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Original strand, 18417982 - 18418371
Alignment:
| Q |
18 |
caaatttgaagagtaactcaatgatgcctcagtagaaccttctttaaagctctttgacttttttatagttgaaatctttgttgagtttcttggtattaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18417982 |
caaatttgaagagtaactcaatgatgcctcagtagaaccttctttaaagctctttgacttttttatagttgaaatctttgttgagtttcttggtattaca |
18418081 |
T |
|
| Q |
118 |
atcttttcagaacttgtgttcaagagataagtttcattgactctctttgttgctggtggtcttggtgactttagctttggagaaagtggtggtgttgatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18418082 |
atcttttcagaacttgtgttcaagagataagtttcattgactctctttgttgctggtggtcttggtgactttagctttggagaaagtggtggtgttgatg |
18418181 |
T |
|
| Q |
218 |
aagttttggttggaagtggtggtgatgatggtagagaaagtgattttggtggcaatttcttgattgaatttcttctttcaagatttggaactctgttaca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18418182 |
aagttttggttggaagtggtggtgatgatggtagtgaaagtgattttggtggtaatttcttgattgaatttcttctttcaagatttggcactctgttaca |
18418281 |
T |
|
| Q |
318 |
agttggttgaagaacaggtcttccattgattttggcaacaggtgatgtagctgtggctgtggttgtgctttctatgcctactttggcctt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
18418282 |
agttggttgaagaacaggtcttccattgattttggcaacaggtgatgtagctgtggctgtggttttgctttctatgcctactttggcctt |
18418371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 251 - 357
Target Start/End: Original strand, 26804663 - 26804769
Alignment:
| Q |
251 |
gagaaagtgattttggtggcaatttcttgattgaatttcttctttcaagatttggaactctgttacaagttggttgaagaacaggtcttccattgatttt |
350 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| ||| || ||||||||||| || || |||||||||||| | |
|
|
| T |
26804663 |
gagaaagtgattttggtgttgatttcttaattgagtttcttctttcaagatttggaacatggttgcatgttggttgaagtactggccttccattgattct |
26804762 |
T |
|
| Q |
351 |
ggcaaca |
357 |
Q |
| |
|
|||||| |
|
|
| T |
26804763 |
agcaaca |
26804769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 251 - 357
Target Start/End: Original strand, 32591176 - 32591282
Alignment:
| Q |
251 |
gagaaagtgattttggtggcaatttcttgattgaatttcttctttcaagatttggaactctgttacaagttggttgaagaacaggtcttccattgatttt |
350 |
Q |
| |
|
||||||||||||| |||| ||||||| ||||| ||||||||||||||||||| ||| ||| || ||||||||||| || || |||||||||||| | |
|
|
| T |
32591176 |
gagaaagtgatttcggtgttgatttcttaattgagtttcttctttcaagatttgaaacatggttgcatgttggttgaagtactggccttccattgattct |
32591275 |
T |
|
| Q |
351 |
ggcaaca |
357 |
Q |
| |
|
|||||| |
|
|
| T |
32591276 |
agcaaca |
32591282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University